Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   JOF24_RS12205 Genome accession   NZ_CP069214
Coordinates   2529643..2530410 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus velezensis strain GUAL210     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2524643..2535410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOF24_RS12185 - 2524845..2525657 (-) 813 WP_015417839.1 pyruvate, water dikinase regulatory protein -
  JOF24_RS12190 ccpN 2525683..2526321 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  JOF24_RS12195 glyS 2526422..2528461 (-) 2040 WP_015417840.1 glycine--tRNA ligase subunit beta -
  JOF24_RS12200 glyQ 2528454..2529341 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  JOF24_RS12205 recO 2529643..2530410 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  JOF24_RS12210 - 2530447..2530590 (-) 144 WP_007408286.1 YqzL family protein -
  JOF24_RS12215 era 2530746..2531651 (-) 906 WP_007408285.1 GTPase Era -
  JOF24_RS12220 - 2531632..2532042 (-) 411 WP_003152976.1 cytidine deaminase -
  JOF24_RS12225 - 2532166..2532540 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  JOF24_RS12230 ybeY 2532521..2532994 (-) 474 WP_012118016.1 rRNA maturation RNase YbeY -
  JOF24_RS12235 - 2532995..2535127 (-) 2133 WP_007408284.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=532977 JOF24_RS12205 WP_007408287.1 2529643..2530410(-) (recO) [Bacillus velezensis strain GUAL210]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=532977 JOF24_RS12205 WP_007408287.1 2529643..2530410(-) (recO) [Bacillus velezensis strain GUAL210]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCAGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGTTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAATGAAATTAAACGGGTCATTGATCTGTATTACGAAGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89