Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JOF24_RS08055 Genome accession   NZ_CP069214
Coordinates   1601633..1602532 (+) Length   299 a.a.
NCBI ID   WP_061890597.1    Uniprot ID   -
Organism   Bacillus velezensis strain GUAL210     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1596633..1607532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOF24_RS08035 - 1597323..1599026 (+) 1704 WP_061890596.1 hypothetical protein -
  JOF24_RS08040 - 1599023..1599304 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  JOF24_RS08045 sucC 1599479..1600636 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  JOF24_RS08050 sucD 1600665..1601567 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  JOF24_RS08055 dprA 1601633..1602532 (+) 900 WP_061890597.1 DNA-processing protein DprA Machinery gene
  JOF24_RS08060 topA 1602714..1604789 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  JOF24_RS08065 trmFO 1604854..1606161 (+) 1308 WP_061890598.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JOF24_RS08070 xerC 1606231..1607148 (+) 918 WP_039251511.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32883.04 Da        Isoelectric Point: 7.8285

>NTDB_id=532962 JOF24_RS08055 WP_061890597.1 1601633..1602532(+) (dprA) [Bacillus velezensis strain GUAL210]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVM
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=532962 JOF24_RS08055 WP_061890597.1 1601633..1602532(+) (dprA) [Bacillus velezensis strain GUAL210]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCATTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGAGAAGGCATTACTGTCATG
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAGCTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.569

100

0.706
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368