Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JOF24_RS07200 Genome accession   NZ_CP069214
Coordinates   1385326..1385610 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain GUAL210     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1380326..1390610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOF24_RS07180 - 1381569..1382477 (+) 909 WP_033574611.1 ketopantoate reductase family protein -
  JOF24_RS07185 - 1382509..1383741 (-) 1233 WP_033574610.1 aminopeptidase -
  JOF24_RS07190 - 1383842..1383976 (-) 135 WP_003154559.1 protein YkpC -
  JOF24_RS07195 mreBH 1384048..1385055 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  JOF24_RS07200 abrB 1385326..1385610 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JOF24_RS07205 - 1385783..1387087 (+) 1305 WP_007409646.1 ATP-binding protein -
  JOF24_RS07210 - 1387089..1387916 (+) 828 WP_015239773.1 gamma-glutamylcyclotransferase family protein -
  JOF24_RS07215 ktrC 1387957..1388622 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  JOF24_RS07220 ade 1388771..1390504 (+) 1734 WP_033574609.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=532961 JOF24_RS07200 WP_003154557.1 1385326..1385610(+) (abrB) [Bacillus velezensis strain GUAL210]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=532961 JOF24_RS07200 WP_003154557.1 1385326..1385610(+) (abrB) [Bacillus velezensis strain GUAL210]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543