Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LA346_RS06690 Genome accession   NZ_CP083627
Coordinates   1265269..1265865 (-) Length   198 a.a.
NCBI ID   WP_000248774.1    Uniprot ID   H8ZYN7
Organism   Streptococcus pneumoniae strain FDAARGOS_1508     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1260269..1270865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA346_RS06685 (LA346_06685) pbp1a 1263113..1265272 (-) 2160 WP_001039987.1 penicillin-binding protein PBP1A -
  LA346_RS06690 (LA346_06690) recU 1265269..1265865 (-) 597 WP_000248774.1 Holliday junction resolvase RecU Machinery gene
  LA346_RS06695 (LA346_06695) - 1265932..1266459 (+) 528 WP_000179549.1 DUF1273 domain-containing protein -
  LA346_RS06700 (LA346_06700) gpsB 1266529..1266870 (+) 342 WP_000200645.1 cell division regulator GpsB -
  LA346_RS06710 (LA346_06710) - 1267356..1268513 (+) 1158 WP_000711414.1 class I SAM-dependent RNA methyltransferase -
  LA346_RS06715 (LA346_06715) mapZ 1268526..1269920 (+) 1395 WP_000039255.1 mid-cell-anchored protein MapZ -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23068.51 Da        Isoelectric Point: 10.0134

>NTDB_id=532946 LA346_RS06690 WP_000248774.1 1265269..1265865(-) (recU) [Streptococcus pneumoniae strain FDAARGOS_1508]
MVNYPHKLSSQKRQPSLSQPKNFANRGMSFEKMINATNDYYLSQGLAVIHKKPTPIQIVRVDYPQRSRAKIVEAYFRQAS
TTDYSGVYNGYYIDFEAKETKQKRAIPMKNFHPHQIQHMEQVLAQQGICFVLLHFSSQQETYLLPAFDLIRFYHQDKGQK
SMPLGYIREYGYEIKAGAFPQIPYLNVIKEHLLGGKTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=532946 LA346_RS06690 WP_000248774.1 1265269..1265865(-) (recU) [Streptococcus pneumoniae strain FDAARGOS_1508]
ATGGTCAACTATCCACATAAACTTTCATCACAAAAAAGACAACCATCTCTTTCTCAACCCAAAAATTTCGCAAATCGAGG
AATGTCTTTTGAAAAGATGATCAATGCTACCAACGACTACTATTTGTCTCAGGGCTTGGCTGTTATACACAAGAAACCAA
CTCCTATTCAAATCGTACGAGTGGACTATCCACAACGAAGTCGTGCCAAGATTGTTGAAGCCTATTTTCGACAAGCTTCA
ACGACGGACTATTCTGGCGTTTATAATGGATATTACATCGACTTTGAAGCCAAGGAAACAAAACAAAAACGTGCGATTCC
GATGAAAAATTTTCATCCACATCAGATTCAGCATATGGAACAAGTCCTTGCCCAACAAGGAATCTGCTTTGTCCTTCTTC
ACTTTTCTTCTCAGCAAGAAACCTACTTATTGCCGGCATTCGATTTGATTCGCTTCTATCATCAAGATAAGGGACAAAAA
TCAATGCCACTTGGATATATTCGAGAATATGGATATGAAATCAAGGCTGGTGCCTTCCCTCAAATTCCTTATCTCAATGT
TATCAAAGAACATTTATTAGGTGGTAAAACAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H8ZYN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49.261

100

0.505