Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JOF24_RS01785 Genome accession   NZ_CP069214
Coordinates   336670..337107 (-) Length   145 a.a.
NCBI ID   WP_015416783.1    Uniprot ID   -
Organism   Bacillus velezensis strain GUAL210     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 331670..342107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOF24_RS01760 - 332690..333826 (+) 1137 WP_007409359.1 zinc-dependent alcohol dehydrogenase -
  JOF24_RS01765 - 333841..334275 (+) 435 WP_007409358.1 RDD family protein -
  JOF24_RS01770 - 334347..334670 (+) 324 WP_060675310.1 YckD family protein -
  JOF24_RS01775 - 334774..336210 (+) 1437 WP_203249432.1 family 1 glycosylhydrolase -
  JOF24_RS01780 nin/comJ 336251..336649 (-) 399 WP_015416782.1 competence protein ComJ Regulator
  JOF24_RS01785 nucA/comI 336670..337107 (-) 438 WP_015416783.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  JOF24_RS01790 hxlB 337465..338022 (-) 558 WP_015416784.1 6-phospho-3-hexuloisomerase -
  JOF24_RS01795 hxlA 338019..338654 (-) 636 WP_015416785.1 3-hexulose-6-phosphate synthase -
  JOF24_RS01800 - 338886..339248 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16038.34 Da        Isoelectric Point: 8.4850

>NTDB_id=532938 JOF24_RS01785 WP_015416783.1 336670..337107(-) (nucA/comI) [Bacillus velezensis strain GUAL210]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLLKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=532938 JOF24_RS01785 WP_015416783.1 336670..337107(-) (nucA/comI) [Bacillus velezensis strain GUAL210]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACATCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTGAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.016

86.897

0.634