Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   JQM61_RS30990 Genome accession   NZ_CP069198
Coordinates   6643409..6643966 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 152962     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6638409..6648966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQM61_RS30975 (JQM61_30975) pilY1 6638501..6641992 (-) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  JQM61_RS30980 (JQM61_30980) pilX 6642004..6642591 (-) 588 WP_034037187.1 type 4a pilus minor pilin PilX -
  JQM61_RS30985 (JQM61_30985) pilW 6642588..6643412 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  JQM61_RS30990 (JQM61_30990) pilV 6643409..6643966 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  JQM61_RS30995 (JQM61_30995) - 6643957..6644463 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  JQM61_RS31000 (JQM61_31000) - 6644569..6645078 (-) 510 WP_003161431.1 Tfp pilus assembly protein FimT/FimU -
  JQM61_RS31005 (JQM61_31005) thiO 6645213..6646307 (+) 1095 WP_020750388.1 glycine oxidase ThiO -
  JQM61_RS31010 (JQM61_31010) pilR 6646353..6647690 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=532877 JQM61_RS30990 WP_003119423.1 6643409..6643966(-) (pilV) [Pseudomonas aeruginosa strain 152962]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=532877 JQM61_RS30990 WP_003119423.1 6643409..6643966(-) (pilV) [Pseudomonas aeruginosa strain 152962]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995