Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JQM61_RS14475 Genome accession   NZ_CP069198
Coordinates   3095314..3095949 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain 152962     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3090314..3100949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQM61_RS14445 (JQM61_14445) murB 3091412..3092431 (-) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -
  JQM61_RS14450 (JQM61_14450) - 3092428..3092892 (-) 465 WP_034037425.1 low molecular weight protein-tyrosine-phosphatase -
  JQM61_RS14455 (JQM61_14455) kdsB 3092892..3093656 (-) 765 WP_003106922.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JQM61_RS14460 (JQM61_14460) - 3093656..3093841 (-) 186 WP_003091157.1 Trm112 family protein -
  JQM61_RS14465 (JQM61_14465) lpxK 3093879..3094877 (-) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  JQM61_RS14470 (JQM61_14470) - 3094877..3095317 (-) 441 WP_034037427.1 biopolymer transporter ExbD -
  JQM61_RS14475 (JQM61_14475) exbB 3095314..3095949 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JQM61_RS14480 (JQM61_14480) - 3096022..3098248 (-) 2227 Protein_2883 DNA internalization-related competence protein ComEC/Rec2 -
  JQM61_RS14485 (JQM61_14485) - 3098379..3098912 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  JQM61_RS14490 (JQM61_14490) - 3099000..3100244 (-) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=532858 JQM61_RS14475 WP_003091163.1 3095314..3095949(-) (exbB) [Pseudomonas aeruginosa strain 152962]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=532858 JQM61_RS14475 WP_003091163.1 3095314..3095949(-) (exbB) [Pseudomonas aeruginosa strain 152962]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81