Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JOS67_RS08715 Genome accession   NZ_CP069195
Coordinates   1790207..1791628 (+) Length   473 a.a.
NCBI ID   WP_046874843.1    Uniprot ID   -
Organism   Vibrio diabolicus strain SLV18     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1785207..1796628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOS67_RS08695 (JOS67_08690) - 1785690..1786496 (-) 807 WP_203346428.1 adenosylcobinamide-GDP ribazoletransferase -
  JOS67_RS08700 (JOS67_08695) cobT 1786496..1787539 (-) 1044 WP_065646827.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  JOS67_RS08705 (JOS67_08700) - 1787787..1788476 (+) 690 WP_203346429.1 NAD(P)H-binding protein -
  JOS67_RS08710 (JOS67_08705) - 1788677..1790050 (+) 1374 WP_054867346.1 L-cystine transporter -
  JOS67_RS08715 (JOS67_08710) sbcB 1790207..1791628 (+) 1422 WP_046874843.1 exodeoxyribonuclease I Machinery gene
  JOS67_RS08720 (JOS67_08715) - 1791684..1792058 (+) 375 WP_005397786.1 CidA/LrgA family protein -
  JOS67_RS08725 (JOS67_08720) - 1792060..1792737 (+) 678 WP_193447166.1 LrgB family protein -
  JOS67_RS08730 (JOS67_08725) cdd 1793181..1794068 (+) 888 WP_005397788.1 cytidine deaminase -
  JOS67_RS08735 (JOS67_08730) purT 1794214..1795389 (+) 1176 WP_193447167.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  JOS67_RS08740 (JOS67_08735) - 1795461..1796111 (-) 651 WP_193447168.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54402.61 Da        Isoelectric Point: 4.8633

>NTDB_id=532830 JOS67_RS08715 WP_046874843.1 1790207..1791628(+) (sbcB) [Vibrio diabolicus strain SLV18]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=532830 JOS67_RS08715 WP_046874843.1 1790207..1791628(+) (sbcB) [Vibrio diabolicus strain SLV18]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACAAACCCCGCGAAAGATCGCCCAAG
CCAGTTCGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGCCAGCCACCTGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACGCTGAACTCGCGAAACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCACGTTGGG
ATTTACTCGATGTACTACGCGCATGCCACGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGTTTTAAATTAGAGCACTTGTCTGTTGCTAACGGCATAGAACATAGTAACGCGCACGATGCGATGGCAGACGTGATTGC
GACTATCGAAATGGCGAAAAAAGTCAAAGCAGCGCAACCAAAATTGTTTGACTACTTCTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGAATTAGTCGACATCGTCAACATGACGCCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGCCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAACAACGCTGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTACACGAAAGACTCTACACTAAGCGAGAAGATCTTGGTGACTTGCTACCAG
TACCAGTTAAGTTGGTTCATTTAAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCGGAGTCT
ATTGGCATTGATCGCCAGCAATGTCTCGCTAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCAGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACACAACTTTACGACGGGTTCTTTTCTCCGGCCG
ATCGCGCAGCCATGGATATCATTCGAGAAACCGACCCGAATAATCTTGCCGCATTGGACATTGAATTTGATGACAAGCGC
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAGAGACGCTGGGCATT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCTTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.127

100

0.801