Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   JOS67_RS07905 Genome accession   NZ_CP069195
Coordinates   1603755..1605278 (+) Length   507 a.a.
NCBI ID   WP_203347245.1    Uniprot ID   -
Organism   Vibrio diabolicus strain SLV18     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1598755..1610278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOS67_RS07880 (JOS67_07875) - 1599088..1599408 (+) 321 WP_005394270.1 STAS domain-containing protein -
  JOS67_RS07885 (JOS67_07880) - 1599435..1600301 (+) 867 WP_046875254.1 OmpA family protein -
  JOS67_RS07890 (JOS67_07885) - 1600298..1602400 (+) 2103 WP_203347242.1 SLBB domain-containing protein -
  JOS67_RS07895 (JOS67_07890) - 1602400..1603086 (+) 687 WP_203347243.1 AAA family ATPase -
  JOS67_RS07900 (JOS67_07895) - 1603098..1603478 (+) 381 WP_203347244.1 Hpt domain-containing protein -
  JOS67_RS07905 (JOS67_07900) luxO 1603755..1605278 (+) 1524 WP_203347245.1 sigma-54-dependent transcriptional regulator Regulator
  JOS67_RS07910 (JOS67_07905) - 1605253..1606323 (+) 1071 WP_203346355.1 glycosyltransferase family 4 protein -
  JOS67_RS07915 (JOS67_07910) - 1606479..1607663 (+) 1185 WP_203346356.1 glycosyltransferase -
  JOS67_RS07920 (JOS67_07915) - 1607675..1608847 (+) 1173 WP_203346357.1 glycosyltransferase family 4 protein -
  JOS67_RS07925 (JOS67_07920) - 1608840..1610270 (+) 1431 WP_203346358.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 56817.75 Da        Isoelectric Point: 6.2828

>NTDB_id=532829 JOS67_RS07905 WP_203347245.1 1603755..1605278(+) (luxO) [Vibrio diabolicus strain SLV18]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLENLVENIQSKFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRKDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTREMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVIPIDMPPLRERGSDI
VTLAKHFLTTYAKQDKKKFSTIDSEAQHIIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVNHLPAQLTRKSKTVRTSTPA
HVTQEPAPPPTITSRPVYVEEQSAPAREPSIPTPEPNIQSSAAASPYFNSDGTIRPMWQVEREAIQNAIAYCDGNVLNAA
VMLELSPSTVYRKKQAWEADEINLEQS

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=532829 JOS67_RS07905 WP_203347245.1 1603755..1605278(+) (luxO) [Vibrio diabolicus strain SLV18]
ATGAGACCAAGGGTGTTACTGGTAGAAGACTCTACTTCACTAGCCATACTTTATAAGCAGTATGTCAAAGACGAACCTTA
TGACATTTTTCATGTCGAAACAGGTCGCGAAGCAATTCAATTTATTGAAAGAAGCAAACCTCAGCTCATCATTCTCGATT
TGAAACTGCCCGATATGTCTGGTGAAGACGTATTGGATTGGATCAACCAGAATGACATTCCTACCTCAGTTATTATTGCT
ACAGCGCACGGCAGCGTAGACTTAGCCGTTAACCTAATTCAAAAAGGTGCGGAAGATTTCTTAGAAAAACCTATTAACGC
CGATCGCCTAAAAACTTCTGTTGCATTACACCTCAAACGCGCCAAATTGGAAAATTTAGTAGAAAACATTCAGTCCAAGT
TTGATCGCCATAACTATCACGGATTTATCGGTTCAAGCCTCCCAATGCAGGCGGTATATAAAACCATTGATGCCGTTGCT
CCAACATCTGCCAGTGTCTTTATTGTGGGTGAAAGCGGCACAGGTAAAGAAGTCTGTGCTGAAGCCGTGCACCGTCAGAG
CGACCGTAAAGACAAGCCTTTTATTGCTATTAACTGCGGGGCTATCCCACGAGATTTAATGGAAAGTGAGATTTTTGGCC
ACGTCAAAGGCGCATTTACCGGGGCCACAACAGACCGAAAAGGTGCTGCGACGCTGGCTCACGGTGGGACGCTTTTTCTC
GATGAACTGTGTGAAATGGAACTTGAGATGCAAAAGAAGTTGCTCCGTTTTCTTCAAACAGGAACCTACACACCGCTTGG
CGGCACTCGAGAGATGAAGGTGGATGTTCGAATCATTTGTGCCACCAACCGAGATCCATTAACAGAAGTGGAAGAAGGTC
GTTTTCGTGAAGATTTGTATTACCGCGTACACGTAATACCTATCGATATGCCCCCCCTACGCGAGCGAGGAAGTGACATT
GTCACGCTAGCCAAGCACTTTTTGACCACTTATGCCAAACAGGACAAAAAGAAATTCTCAACAATCGACAGCGAAGCTCA
ACATATCATCAAACATTACGAATGGCCGGGTAATGTAAGGCAATTACAAAACATCATACGTAACATTGTGGTGCTTAATA
ATGACGAAAAAGTCACGGTGAATCACCTACCCGCTCAACTGACTAGAAAGTCTAAAACGGTGAGAACATCCACTCCCGCA
CATGTAACTCAAGAGCCAGCACCCCCTCCAACAATAACATCCCGACCAGTGTATGTTGAGGAACAATCGGCCCCCGCTAG
AGAACCGTCAATACCGACACCGGAACCTAACATACAATCATCAGCGGCTGCCTCGCCGTACTTTAACTCTGATGGAACCA
TTCGCCCTATGTGGCAAGTGGAGCGTGAGGCGATTCAAAACGCAATCGCATACTGTGATGGCAACGTACTCAATGCCGCC
GTAATGCTGGAGCTAAGCCCATCTACGGTTTACCGAAAAAAACAAGCGTGGGAAGCGGATGAAATTAATCTCGAACAATC
TTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(457-493)

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.593

97.041

0.481