Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   JOS67_RS05525 Genome accession   NZ_CP069195
Coordinates   1066491..1067897 (+) Length   468 a.a.
NCBI ID   WP_203347070.1    Uniprot ID   A0AA92LTQ1
Organism   Vibrio diabolicus strain SLV18     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1061491..1072897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOS67_RS05505 (JOS67_05500) rsxB 1062024..1062620 (-) 597 WP_005396655.1 electron transport complex subunit RsxB -
  JOS67_RS05510 (JOS67_05505) rsxA 1062624..1063202 (-) 579 WP_005380762.1 electron transport complex subunit RsxA -
  JOS67_RS05520 (JOS67_05515) uvrB 1064166..1066196 (+) 2031 WP_047010067.1 excinuclease ABC subunit UvrB -
  JOS67_RS05525 (JOS67_05520) luxO 1066491..1067897 (+) 1407 WP_203347070.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  JOS67_RS05530 (JOS67_05525) luxU 1067894..1068238 (+) 345 WP_012841577.1 quorum-sensing phosphorelay protein LuxU -
  JOS67_RS05535 (JOS67_05530) - 1068350..1069246 (-) 897 WP_150919158.1 YvcK family protein -
  JOS67_RS05540 (JOS67_05535) moaA 1069545..1070534 (+) 990 WP_005396649.1 GTP 3',8-cyclase MoaA -
  JOS67_RS05545 (JOS67_05540) moaB 1070640..1071152 (+) 513 WP_203347071.1 molybdenum cofactor biosynthesis protein B -
  JOS67_RS05550 (JOS67_05545) moaC 1071179..1071658 (+) 480 WP_005396647.1 cyclic pyranopterin monophosphate synthase MoaC -
  JOS67_RS05555 (JOS67_05550) moaD 1071655..1071912 (+) 258 WP_005396646.1 molybdopterin synthase sulfur carrier subunit -
  JOS67_RS05560 (JOS67_05555) moaE 1071914..1072369 (+) 456 WP_048625774.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52134.72 Da        Isoelectric Point: 6.2543

>NTDB_id=532827 JOS67_RS05525 WP_203347070.1 1066491..1067897(+) (luxO) [Vibrio diabolicus strain SLV18]
MQQKSEGPKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNLGNQSYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFVRFAPDVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
SVAKFIEPKVMTASEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=532827 JOS67_RS05525 WP_203347070.1 1066491..1067897(+) (luxO) [Vibrio diabolicus strain SLV18]
ATGCAACAAAAATCTGAAGGTCCTAAATCTCGTTACCTTTTAATGGTTGAGGATACCGCATCTGTTGCGGCACTGTACCG
CTCATACCTGACACCGCTTGGTATAGATATCAATATTGTCGGTACAGGTAGGGATGCCATTGAAAGTCTCAACCATAGAA
TTCCAGATCTTATTCTGCTCGATCTTCGTCTGCCAGATATGACGGGGATGGACGTTTTACACGCTGTAAAAAAGAGTCAT
CCAGACGTACCTATTATTTTTATGACCGCTCACGGTTCTATCGATACCGCGGTAGAAGCAATGCGTCATGGCTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCAGACCGTTTACGTGTCACGGTTAACAATGCGATTCGTAAAGCGACTAAGTTAAAAA
ACGAGGCTGATAACCTGGGAAATCAAAGTTATCAAGGCTTTATTGGCAGTAGTCAAACAATGCAACAGGTTTACCGCACG
ATTGATTCAGCAGCGAGCAGTAAAGCGAGTATCTTCATCACTGGTGAAAGTGGTACGGGTAAAGAGGTATGTGCCGAGGC
AATCCATGCTGCAAGCAAGCGTGGTGACAAGCCTTTTATTGCGATTAACTGTGCTGCAATTCCAAAAGATTTGATTGAGA
GTGAACTGTTTGGTCACGTGAAAGGTGCTTTTACCGGCGCAGCAAATGATCGTCAGGGTGCAGCGGAATTAGCGGATGGT
GGCACACTTTTCCTTGATGAACTGTGTGAGATGGACTTAGATTTGCAAACCAAATTGCTGCGATTTATTCAAACCGGCAC
GTTCCAAAAAGTGGGCTCATCAAAAATGAAGAGCGTGGATGTTCGCTTTGTTTGTGCAACTAACCGTGACCCATGGAAAG
AGGTACAAGAAGGTCGATTCCGTGAAGATTTGTACTATCGTTTGTATGTCATTCCTTTGCATTTGCCACCTTTACGTGAA
CGAGGTGAAGATGTCATTGAAATTGCATATTCACTGTTAGGCTATATGTCGCACGAAGAAGGAAAAAGCTTCGTACGTTT
TGCGCCTGATGTAATCGACCGATTTAATAGCTATGAGTGGCCTGGCAACGTTCGTCAGCTACAAAACGTGCTGCGCAATA
TCGTTGTTCTAAACAACGGTAAAGAAATCACGTTGGATATGTTACCGCCACCGCTGAATCAACCTCTTGACCGTCCGTCT
TCTGTGGCGAAATTCATTGAGCCGAAAGTGATGACTGCGTCTGAGATTATGCCGTTGTGGATGACAGAAAAAATGGCGAT
AGAGCAAGCGATTGAAGCGTGTGATGGCAATATCCCCCGAGCGGCGGGATACCTTGATGTCAGTCCGTCGACGATTTACC
GCAAGTTACAGGCTTGGAATGGCAAGGAAGAGCGGCAAAAAGTATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.082

95.94

0.835