Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   JOS67_RS03420 Genome accession   NZ_CP069195
Coordinates   600789..601307 (+) Length   172 a.a.
NCBI ID   WP_005396698.1    Uniprot ID   A0AAE4S8W0
Organism   Vibrio diabolicus strain SLV18     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 595789..606307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOS67_RS03410 (JOS67_03405) gshA 598506..600074 (+) 1569 WP_046875082.1 glutamate--cysteine ligase -
  JOS67_RS03415 (JOS67_03410) - 600138..600704 (+) 567 WP_083612681.1 hypothetical protein -
  JOS67_RS03420 (JOS67_03415) luxS 600789..601307 (+) 519 WP_005396698.1 S-ribosylhomocysteine lyase Regulator
  JOS67_RS03425 (JOS67_03420) - 601422..602690 (-) 1269 WP_005396696.1 HlyC/CorC family transporter -
  JOS67_RS03430 (JOS67_03425) - 602815..603609 (-) 795 WP_047008980.1 cytochrome C assembly family protein -
  JOS67_RS03435 (JOS67_03430) ffh 603834..605216 (+) 1383 WP_203343405.1 signal recognition particle protein -
  JOS67_RS03440 (JOS67_03435) rpsP 605426..605674 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  JOS67_RS03445 (JOS67_03440) rimM 605704..606252 (+) 549 WP_005379964.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19078.77 Da        Isoelectric Point: 4.6153

>NTDB_id=532820 JOS67_RS03420 WP_005396698.1 600789..601307(+) (luxS) [Vibrio diabolicus strain SLV18]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNSDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKSILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=532820 JOS67_RS03420 WP_005396698.1 600789..601307(+) (luxS) [Vibrio diabolicus strain SLV18]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGCATGAATGCACCGGCAGTGCGAGTGGCGAAGACCATGCAGAC
CCCAAAAGGGGACACGATTACTGTCTTCGATTTACGCTTTACCGCGCCAAACAAAGACATCCTTTCTGAAAAAGGTATCC
ATACACTAGAGCACCTTTATGCAGGTTTTATGCGCAATCACCTAAACAGCGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACCGGCTTTTACATGAGCCTGATTGGCACTCCATCAGAGCAGCAAGTAGCGGATGCTTGGATTGCGGC
CATGGAAGACGTACTAAAGGTAGAAAGCCAGAACAAGATCCCTGAACTCAACGAATACCAATGTGGCACGGCAGCGATGC
ACTCTTTAGAAGAAGCACAACAGATCGCGAAGAGCATTTTGGATGCTGGTGTATCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAATCGATGCTAAAAGAGCTGCGCATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86