Detailed information NTG0532806

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LAJ48_RS05970
• Genome accession: NZ_CP083610
• Coordinates: 1239400..1240425 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain EC2648-Vir1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1234400..1245425

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LAJ48_RS05950 (LAJ48_05955)	metJ	1235461..1235778 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
LAJ48_RS05955 (LAJ48_05960)	yiiX	1235962..1236570 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
LAJ48_RS05960 (LAJ48_05965)	rpmE	1236631..1236843 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
LAJ48_RS05965 (LAJ48_05970)	priA	1237046..1239244 (+)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
LAJ48_RS05970 (LAJ48_05975)	cytR	1239400..1240425 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
LAJ48_RS05975 (LAJ48_05980)	ftsN	1240517..1241476 (+)	960	WP_000068828.1	cell division protein FtsN	-
LAJ48_RS05980 (LAJ48_05985)	hslV	1241569..1242099 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LAJ48_RS05985 (LAJ48_05990)	hslU	1242109..1243440 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
LAJ48_RS05990 (LAJ48_05995)	menA	1243507..1244433 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LAJ48_RS05995 (LAJ48_06000)	rraA	1244526..1245011 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LAJ48_RS06000 (LAJ48_06005)	zapB	1245096..1245341 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=532806 LAJ48_RS05970 WP_000644904.1 1239400..1240425(+) (cytR) [Escherichia coli strain EC2648-Vir1]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=532806 LAJ48_RS05970 WP_000644904.1 1239400..1240425(+) (cytR) [Escherichia coli strain EC2648-Vir1]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628