Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   IS492_RS07745 Genome accession   NZ_CP069177
Coordinates   1673366..1673923 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Z154     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1668366..1678923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS492_RS07730 (IS492_07725) pilY1 1668458..1671949 (-) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -
  IS492_RS07735 (IS492_07730) pilX 1671961..1672548 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  IS492_RS07740 (IS492_07735) pilW 1672545..1673369 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  IS492_RS07745 (IS492_07740) pilV 1673366..1673923 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  IS492_RS07750 (IS492_07745) - 1673914..1674420 (-) 507 WP_016264184.1 Tfp pilus assembly protein FimT/FimU -
  IS492_RS07755 (IS492_07750) - 1674526..1675035 (-) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  IS492_RS07760 (IS492_07755) thiO 1675170..1676264 (+) 1095 WP_031652859.1 glycine oxidase ThiO -
  IS492_RS07765 (IS492_07760) pilR 1676310..1677647 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=532688 IS492_RS07745 WP_003119423.1 1673366..1673923(-) (pilV) [Pseudomonas aeruginosa strain Z154]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=532688 IS492_RS07745 WP_003119423.1 1673366..1673923(-) (pilV) [Pseudomonas aeruginosa strain Z154]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995