Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LBUCD034_RS03485 Genome accession   NC_018610
Coordinates   750856..752667 (+) Length   603 a.a.
NCBI ID   WP_014939610.1    Uniprot ID   J9W275
Organism   Lentilactobacillus buchneri subsp. silagei CD034     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 745856..757667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBUCD034_RS03465 (LBUCD034_0717) - 745901..746593 (+) 693 WP_013727493.1 response regulator transcription factor -
  LBUCD034_RS03470 (LBUCD034_0718) - 746590..747900 (+) 1311 WP_013727494.1 sensor histidine kinase -
  LBUCD034_RS03475 (LBUCD034_0719) - 747988..749526 (-) 1539 WP_014939608.1 gamma-glutamylcysteine synthetase -
  LBUCD034_RS03480 (LBUCD034_0721) - 749682..750821 (+) 1140 WP_014939609.1 competence protein CoiA -
  LBUCD034_RS03485 (LBUCD034_0722) pepF 750856..752667 (+) 1812 WP_014939610.1 oligoendopeptidase F Regulator
  LBUCD034_RS03490 (LBUCD034_0723) - 752741..753361 (-) 621 WP_013727498.1 DsbA family protein -
  LBUCD034_RS03495 (LBUCD034_0724) - 753576..754229 (+) 654 WP_013727499.1 GTP pyrophosphokinase family protein -
  LBUCD034_RS03500 (LBUCD034_0725) - 754207..755019 (+) 813 WP_013727500.1 NAD kinase -
  LBUCD034_RS03505 (LBUCD034_0726) - 755012..755902 (+) 891 WP_014939611.1 RluA family pseudouridine synthase -
  LBUCD034_RS03510 (LBUCD034_0728) - 756012..756860 (+) 849 WP_014939612.1 methyltransferase domain-containing protein -
  LBUCD034_RS03515 (LBUCD034_0729) - 756878..757390 (+) 513 WP_014939613.1 tRNA (cytidine(34)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69704.80 Da        Isoelectric Point: 4.9207

>NTDB_id=53260 LBUCD034_RS03485 WP_014939610.1 750856..752667(+) (pepF) [Lentilactobacillus buchneri subsp. silagei CD034]
MPKPQELPLRKDVPEELTWDLTTIYPTDQEFETDYDAVQTGAKQFAELAGTIEKSAASLLTATERLMTLSRKLEKVYVYA
QLKNDQDTSEDKYQAMYSRAESLGAQFGAATAWFEPELLKISDDQIKQFYQDEPKLADYRRFFDQTFKRRNHILSNDVEA
VLAGAGDIFSSGEKTFGILDNTDLSFPAVTDENGNQVKLSQGVYGILLESTKQSVRKEAFEKLYQVYRQFQHTLAATLTT
NVKNHNFKANIRHYNNALEAALADNEVPTDVYNNLIKVVNEHLDLLHRYVALRKKILGLDELHMYDMYTSLVGKKSPKYT
FEQSKQIALEALQVMGPDYVSHVKEEFNNRWIDVVENQFKRSGGYSSGTYDTNPYILLNWKDNLDNLYTLIHETGHSMHS
YYSHHNQPYQYGDYSIFVAEIASTTNENILTDYLLNKFKDDDEMKKFILNYYLDGFKGTVFRQTQFAEFEQYIHEQDAKG
QPLTANFMDDYYRNLNQKYYGDAVISDPQIGLEWSRIPHFYYNFYVYQYSTGFAAASTLADGIVNGGQANVDKYLNYLKS
GSSDTPTNVMKKAGVDMTQPEYLEKAFQIFEQRLDEFERLYNK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=53260 LBUCD034_RS03485 WP_014939610.1 750856..752667(+) (pepF) [Lentilactobacillus buchneri subsp. silagei CD034]
ATGCCAAAACCACAAGAATTACCGCTTAGAAAAGATGTTCCAGAAGAACTGACTTGGGACCTGACGACGATTTATCCAAC
CGATCAGGAATTTGAAACTGACTATGACGCTGTTCAAACCGGTGCCAAACAATTCGCTGAATTAGCCGGAACCATTGAGA
AGAGTGCGGCCTCACTGCTGACAGCAACTGAGCGTTTGATGACCTTAAGTCGAAAGCTTGAAAAAGTCTATGTCTACGCC
CAGTTGAAAAATGACCAGGATACCAGTGAAGACAAGTATCAGGCCATGTATTCCCGTGCGGAATCCTTGGGGGCTCAATT
TGGGGCGGCAACTGCCTGGTTTGAACCGGAACTCCTCAAAATTTCTGACGATCAAATCAAGCAGTTTTATCAGGATGAAC
CCAAATTGGCCGATTATCGACGGTTTTTCGATCAAACCTTTAAACGCCGTAATCATATTTTAAGCAACGATGTTGAAGCC
GTTCTGGCCGGGGCCGGCGATATTTTCTCGTCTGGAGAGAAAACCTTTGGCATTTTGGATAACACTGATCTTTCATTCCC
AGCGGTCACTGATGAGAATGGTAATCAGGTGAAGTTATCTCAAGGTGTTTATGGTATTTTATTGGAATCGACAAAGCAAA
GTGTGCGTAAAGAAGCGTTTGAAAAATTGTATCAAGTCTATCGTCAGTTCCAGCACACGCTGGCGGCAACACTGACCACT
AATGTTAAGAATCACAACTTCAAAGCCAACATCCGCCACTATAACAATGCATTGGAGGCCGCTTTGGCTGATAACGAAGT
GCCGACAGACGTTTATAACAACCTGATCAAAGTGGTCAACGAGCATCTCGATCTGCTGCACAGGTACGTTGCTTTGCGTA
AAAAGATTCTGGGCCTTGATGAACTGCATATGTACGATATGTATACGTCCCTAGTTGGTAAAAAATCACCCAAGTATACG
TTTGAACAATCCAAGCAAATCGCCTTGGAGGCTTTGCAGGTAATGGGGCCGGATTATGTCAGCCACGTCAAAGAGGAGTT
CAACAACCGTTGGATTGACGTTGTTGAAAATCAATTCAAAAGAAGCGGCGGCTATTCCTCCGGGACTTACGATACCAATC
CGTATATTTTACTGAATTGGAAGGACAATTTGGATAATCTCTACACGCTGATCCACGAAACCGGTCATAGTATGCACAGC
TACTATTCCCATCATAACCAGCCTTATCAGTATGGGGATTACTCCATTTTTGTGGCTGAAATTGCGTCCACGACTAACGA
GAATATCTTGACGGATTATCTCTTGAATAAATTCAAAGATGACGATGAAATGAAGAAATTTATTTTAAATTACTATCTGG
ATGGATTTAAGGGAACGGTCTTCCGTCAAACTCAGTTTGCTGAATTTGAACAATACATTCATGAACAGGATGCAAAAGGT
CAACCATTAACCGCCAACTTTATGGATGATTACTATCGCAATTTAAATCAAAAATACTACGGGGATGCCGTGATTTCTGA
CCCTCAGATTGGTCTTGAATGGTCACGGATTCCACATTTCTATTACAACTTCTACGTTTACCAATATTCGACCGGCTTTG
CTGCCGCATCGACATTGGCTGATGGCATTGTGAACGGCGGCCAGGCCAACGTTGATAAATATTTGAATTACCTCAAATCA
GGCAGTTCTGACACGCCAACCAACGTCATGAAAAAAGCCGGCGTTGACATGACGCAACCGGAATACCTTGAGAAGGCCTT
CCAGATTTTTGAGCAGCGTCTGGATGAATTTGAGCGTTTGTACAACAAATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J9W275

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.03

98.507

0.522

Multiple sequence alignment