Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   JNO51_RS12570 Genome accession   NZ_CP069163
Coordinates   2630236..2631663 (+) Length   475 a.a.
NCBI ID   WP_215777744.1    Uniprot ID   -
Organism   Paludibacterium sp. B53371     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2625236..2636663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNO51_RS12545 - 2626875..2627855 (+) 981 WP_215777732.1 KpsF/GutQ family sugar-phosphate isomerase -
  JNO51_RS12550 - 2627882..2628406 (+) 525 WP_215777734.1 HAD family hydrolase -
  JNO51_RS12555 lptC 2628403..2628969 (+) 567 WP_215777737.1 LPS export ABC transporter periplasmic protein LptC -
  JNO51_RS12560 lptA 2628959..2629498 (+) 540 WP_215777739.1 lipopolysaccharide transport periplasmic protein LptA -
  JNO51_RS12565 lptB 2629501..2630229 (+) 729 WP_215777742.1 LPS export ABC transporter ATP-binding protein -
  JNO51_RS12570 rpoN/rpoN1 2630236..2631663 (+) 1428 WP_215777744.1 RNA polymerase factor sigma-54 Machinery gene
  JNO51_RS12575 hpf 2631733..2632047 (+) 315 WP_215777746.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  JNO51_RS12580 ptsN 2632148..2632609 (+) 462 WP_215777748.1 PTS IIA-like nitrogen regulatory protein PtsN -
  JNO51_RS12585 hprK 2632602..2633558 (+) 957 WP_215777751.1 HPr(Ser) kinase/phosphatase -
  JNO51_RS12590 rapZ 2633539..2634384 (+) 846 WP_215777754.1 RNase adapter RapZ -
  JNO51_RS12595 - 2634424..2635041 (+) 618 WP_215777757.1 flavin prenyltransferase UbiX -
  JNO51_RS12600 - 2635038..2636525 (+) 1488 WP_215777759.1 NAD(P)H-hydrate dehydratase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 52976.85 Da        Isoelectric Point: 4.7096

>NTDB_id=532598 JNO51_RS12570 WP_215777744.1 2630236..2631663(+) (rpoN/rpoN1) [Paludibacterium sp. B53371]
MKQSLQLKVSQQLTLTPQLQQSIKLLQLSTVELQAEVERYLLENPLLERDEDTPGEPGLPERPMESSHSEEVPKQQEQDT
ASEPGMEALQDWGSGSGTGSGGSYDDEFDPFYNVPCHQTLRELLLSQLGEIDLPQRDHAVVQLLIEELDDDGYLTTPLAE
LVASLPEELALDEDELAVGLRMLQQFDPPGVGARSLPESLQLQLARLPASTPGKSLAGDIIAQHLALLGARDYTRLRKLL
GTSDDALREAQTLIARLNPRPASGFDARDTHYVTPDVTVRKRKGRWVAELNSSAVPQLRVNQIYARMLSENRQQSGDLGS
RLQEARWLVKNIQQRFDTILKVSEAIVDKQQAFFEQGEVAMRPMILRNIADELGLHESTVSRVTTQKYLLCPRGLFELKY
FFGSALETDSGEECSATAIKAHIRRLIEQENPSRPLSDSAIAEQLSSQGIQVARRTVAKYREAMQIAPVNQRKAL

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=532598 JNO51_RS12570 WP_215777744.1 2630236..2631663(+) (rpoN/rpoN1) [Paludibacterium sp. B53371]
ATGAAGCAAAGCCTCCAGCTCAAAGTCTCCCAGCAGTTGACCCTGACGCCGCAATTGCAGCAGTCGATCAAGCTGCTGCA
ACTGTCGACGGTCGAACTGCAAGCCGAAGTCGAACGCTATCTGCTGGAAAACCCGCTGCTCGAGCGCGATGAAGACACCC
CCGGCGAACCCGGCCTGCCGGAGCGCCCGATGGAAAGCAGCCACAGCGAAGAGGTCCCGAAGCAGCAGGAGCAGGACACG
GCGAGCGAACCGGGCATGGAAGCGCTGCAGGACTGGGGCAGCGGCAGCGGGACCGGCAGTGGTGGCAGCTACGACGACGA
ATTCGACCCCTTTTACAACGTGCCCTGTCATCAGACCCTGCGCGAGCTGTTGCTGTCGCAGCTGGGAGAAATCGACCTGC
CGCAGCGCGACCACGCCGTCGTGCAACTGCTGATTGAAGAACTGGATGACGATGGCTACCTGACCACGCCACTGGCCGAA
CTGGTGGCCAGTCTGCCCGAAGAGCTGGCCCTGGACGAAGATGAACTGGCCGTCGGCCTGCGCATGCTGCAGCAGTTCGA
CCCCCCCGGCGTCGGCGCCCGCTCACTGCCCGAATCCCTGCAACTGCAACTGGCCAGATTACCGGCCAGCACCCCCGGCA
AATCCCTGGCCGGCGACATCATCGCGCAGCACCTGGCCCTGCTCGGCGCCCGTGACTACACCCGCCTGCGCAAGCTGCTG
GGCACCAGCGACGATGCCCTGCGCGAAGCCCAGACCCTGATCGCCCGCCTCAACCCGCGTCCGGCCAGCGGCTTCGACGC
GCGCGACACCCATTACGTCACCCCGGACGTCACCGTCAGAAAGCGTAAAGGCCGCTGGGTGGCCGAGCTCAACAGCAGCG
CCGTCCCGCAATTGCGCGTCAACCAGATCTACGCCCGCATGCTGTCGGAAAACCGCCAGCAATCCGGCGATCTCGGCAGT
CGTCTGCAAGAGGCACGGTGGCTGGTCAAGAACATTCAACAGCGATTTGACACTATCCTGAAAGTGTCGGAAGCTATAGT
CGACAAGCAGCAAGCGTTCTTTGAACAAGGCGAAGTGGCCATGCGGCCGATGATCCTGCGCAATATCGCCGATGAGCTCG
GGCTGCACGAATCCACCGTCTCCAGAGTCACCACCCAGAAATATCTGCTCTGTCCCCGGGGACTTTTCGAGCTGAAATAT
TTCTTCGGCAGTGCCCTGGAAACCGACAGTGGCGAAGAATGCTCCGCCACCGCCATCAAGGCACATATCCGCAGGCTGAT
CGAACAGGAGAACCCATCCAGGCCACTGTCAGACAGCGCCATTGCCGAACAGCTATCCAGCCAGGGAATTCAGGTTGCAA
GACGTACCGTTGCCAAGTATCGTGAAGCCATGCAGATAGCGCCGGTCAATCAAAGAAAGGCTCTGTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(117-304)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(320-473)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.594

100

0.545