Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JNO51_RS09705 Genome accession   NZ_CP069163
Coordinates   2009059..2010420 (-) Length   453 a.a.
NCBI ID   WP_215776507.1    Uniprot ID   -
Organism   Paludibacterium sp. B53371     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2004059..2015420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNO51_RS09680 - 2004973..2005185 (-) 213 WP_252346049.1 hypothetical protein -
  JNO51_RS09685 - 2005289..2006005 (-) 717 WP_215776499.1 C40 family peptidase -
  JNO51_RS09690 - 2006068..2007750 (+) 1683 WP_215776501.1 AarF/ABC1/UbiB kinase family protein -
  JNO51_RS09695 - 2007824..2008600 (+) 777 WP_215776503.1 hypothetical protein -
  JNO51_RS09700 - 2008679..2008999 (+) 321 WP_215776505.1 DUF2325 domain-containing protein -
  JNO51_RS09705 radA 2009059..2010420 (-) 1362 WP_215776507.1 DNA repair protein RadA Machinery gene
  JNO51_RS09710 - 2010423..2010941 (-) 519 WP_215776509.1 hypothetical protein -
  JNO51_RS09715 - 2010943..2011707 (-) 765 WP_215776511.1 SDR family oxidoreductase -
  JNO51_RS09720 hpnE 2011704..2013026 (-) 1323 WP_252346050.1 hydroxysqualene dehydroxylase HpnE -
  JNO51_RS09725 hpnD 2012993..2013838 (-) 846 WP_252346051.1 presqualene diphosphate synthase HpnD -
  JNO51_RS09730 hpnC 2013865..2014677 (-) 813 WP_215776513.1 squalene synthase HpnC -
  JNO51_RS09735 - 2014845..2015006 (+) 162 WP_215776514.1 hypothetical protein -
  JNO51_RS09740 - 2015024..2015215 (+) 192 WP_215776515.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48467.76 Da        Isoelectric Point: 6.8215

>NTDB_id=532594 JNO51_RS09705 WP_215776507.1 2009059..2010420(-) (radA) [Paludibacterium sp. B53371]
MAKSKTVFSCTECGGETPKWQGQCPHCGAWNTLTESLAQPAAGSGRYEAWSGTAQVQLLSEVQAEDVPRDSAGIDELDRV
LGGGLVRGAVILIGGDPGIGKSTLLLQALAAMGATRPVLYVSGEESPQQIAMRASRLAVDAGKVRLLSEIRLEAIMAVLK
RDKPEVAVIDSIQTLYTDQVTSAPGSVSQVRECAAQLTRMAKQSGTTLLLVGHVTKEGSLAGPRVLEHMVDTVLYFEGDS
HSSFRMIRAVKNRFGAANELGVFAMTERGLKGVSNPSAIFLSSWRDDVSGACVLVTQEGSRPLLVEVQALVDDAHGFQPK
RLSVGLEQNRLAMLLAVLHRHAGVACFDQDVFLNAVGGVKITEPAADLALILAMVSSLRNRPLPPKMVVFGEVGLAGEVR
PVTRGQERLREAAKLGFTRAIVPMANRPRQEIEGLEVIGVDRLEQAVDYCRGQ

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=532594 JNO51_RS09705 WP_215776507.1 2009059..2010420(-) (radA) [Paludibacterium sp. B53371]
ATGGCCAAAAGTAAAACCGTTTTTTCCTGTACCGAATGTGGTGGCGAAACCCCCAAGTGGCAGGGGCAGTGCCCGCATTG
TGGTGCCTGGAATACCCTGACTGAATCGCTGGCGCAACCTGCTGCCGGCAGCGGTCGCTATGAAGCCTGGAGCGGCACCG
CCCAGGTGCAGTTGCTCAGTGAGGTGCAGGCCGAAGACGTGCCGCGCGACAGTGCCGGCATTGACGAGCTGGACCGGGTG
CTGGGCGGTGGCCTGGTGCGCGGGGCGGTCATCCTGATCGGCGGCGACCCGGGCATCGGCAAGTCGACCTTGCTGCTGCA
GGCGCTGGCTGCCATGGGCGCCACGCGGCCTGTGCTGTATGTCTCCGGTGAAGAGTCGCCGCAGCAGATTGCCATGCGCG
CCTCGCGGCTGGCCGTGGATGCCGGCAAGGTGCGTCTGCTGTCTGAAATCCGCCTGGAAGCCATCATGGCGGTGCTCAAG
CGCGACAAGCCGGAAGTGGCGGTGATCGACTCCATTCAGACCCTGTATACCGATCAGGTCACCTCGGCGCCCGGCTCGGT
GTCACAGGTGCGCGAATGCGCTGCCCAGCTGACGCGCATGGCCAAACAAAGCGGCACGACGCTGTTGCTGGTCGGCCATG
TCACCAAGGAAGGCTCGCTGGCCGGACCGCGCGTGCTCGAACACATGGTCGACACGGTGCTGTATTTCGAGGGGGATTCG
CACTCCAGCTTCCGCATGATTCGCGCGGTGAAGAACCGCTTTGGCGCCGCCAATGAACTGGGCGTGTTCGCCATGACCGA
GCGTGGCCTCAAGGGGGTGTCCAATCCTTCGGCAATTTTCCTGTCCTCCTGGCGAGATGATGTGTCCGGGGCCTGCGTGC
TGGTCACCCAGGAAGGCTCGCGCCCGCTGCTGGTGGAAGTCCAGGCGCTGGTCGACGATGCGCACGGGTTTCAGCCCAAG
CGTCTCAGCGTTGGCCTGGAGCAGAACCGGCTGGCCATGCTGCTGGCCGTGCTGCACCGCCATGCCGGCGTGGCGTGTTT
TGATCAGGACGTGTTTCTTAATGCGGTCGGCGGCGTAAAGATCACCGAGCCGGCCGCCGACCTGGCGCTGATCCTGGCCA
TGGTGTCCTCGCTGCGCAATCGCCCCCTGCCACCCAAGATGGTGGTGTTTGGCGAGGTGGGGCTTGCCGGCGAGGTCCGG
CCGGTCACGCGTGGACAGGAACGACTGCGCGAGGCCGCCAAGCTGGGCTTTACCCGTGCCATCGTGCCAATGGCCAATCG
GCCGAGGCAGGAGATTGAGGGGCTGGAAGTGATTGGTGTCGACCGGCTGGAACAGGCGGTGGATTACTGCCGCGGCCAGT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(62-218)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(360-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.485

100

0.494
  radA Streptococcus mitis SK321

46.12

99.558

0.459
  radA Streptococcus mitis NCTC 12261

45.898

99.558

0.457
  radA Streptococcus pneumoniae Rx1

45.575

99.779

0.455
  radA Streptococcus pneumoniae D39

45.575

99.779

0.455
  radA Streptococcus pneumoniae R6

45.575

99.779

0.455
  radA Streptococcus pneumoniae TIGR4

45.575

99.779

0.455