Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   JNO51_RS01330 Genome accession   NZ_CP069163
Coordinates   289276..290274 (-) Length   332 a.a.
NCBI ID   WP_252346147.1    Uniprot ID   -
Organism   Paludibacterium sp. B53371     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 284276..295274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNO51_RS01310 - 284797..286602 (+) 1806 WP_215780476.1 PglL family O-oligosaccharyltransferase -
  JNO51_RS01315 rpoH 286707..287558 (-) 852 WP_215780479.1 RNA polymerase sigma factor RpoH -
  JNO51_RS01320 ftsX 287676..288584 (-) 909 WP_215780482.1 permease-like cell division protein FtsX -
  JNO51_RS01325 ftsE 288581..289234 (-) 654 WP_215780485.1 cell division ATP-binding protein FtsE -
  JNO51_RS01330 pilA 289276..290274 (-) 999 WP_252346147.1 signal recognition particle-docking protein FtsY Machinery gene
  JNO51_RS01335 rsmD 290449..291000 (+) 552 WP_215780490.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  JNO51_RS01340 - 291072..291323 (+) 252 WP_215780493.1 YfhL family 4Fe-4S dicluster ferredoxin -
  JNO51_RS01360 tuf 291826..293016 (+) 1191 WP_215780495.1 elongation factor Tu -
  JNO51_RS01370 secE 293171..293524 (+) 354 WP_215780497.1 preprotein translocase subunit SecE -
  JNO51_RS01375 nusG 293532..294065 (+) 534 WP_215780499.1 transcription termination/antitermination protein NusG -
  JNO51_RS01380 rplK 294165..294596 (+) 432 WP_215780501.1 50S ribosomal protein L11 -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 36053.40 Da        Isoelectric Point: 5.5368

>NTDB_id=532586 JNO51_RS01330 WP_252346147.1 289276..290274(-) (pilA) [Paludibacterium sp. B53371]
MFSFFKKKSDTDVSEVEAAPREPSDTPAIPQRSWTERLKSGLAKTRDKLGKNLASLFGGGQIDEALYEELETVLLTADMG
VDATEHLLREVRARVSLRGLKDSTELKQTLKDVLYELIAPLEVPLDTSQGKPFVIMMAGVNGAGKTTSIGKLAKYFQNQN
KSVLLAAGDTFRAAAREQLMEWGERNNVTVITQQGGDSAAVCFDAINSAKARGIDIVLADTAGRLPTQLHLMEEIRKVKR
VIQKALPEAPQEVVLVLDANIGQNALNQVKVFDEALGLTGLILTKLDGTAKGGIIAAIAKQHPVPLRFIGVGEGLDDLRP
FSARDYIDALFD

Nucleotide


Download         Length: 999 bp        

>NTDB_id=532586 JNO51_RS01330 WP_252346147.1 289276..290274(-) (pilA) [Paludibacterium sp. B53371]
ATGTTCAGTTTTTTCAAAAAGAAATCCGATACCGACGTCAGCGAAGTCGAAGCCGCTCCGCGCGAACCTTCCGACACGCC
GGCCATCCCTCAGCGCAGCTGGACCGAACGACTCAAGTCGGGCCTGGCCAAGACGCGTGACAAACTCGGCAAAAACCTCG
CCTCGCTCTTCGGTGGCGGACAGATCGACGAAGCGCTCTACGAAGAACTCGAGACCGTGCTGCTCACGGCCGACATGGGG
GTCGATGCCACCGAACACCTGCTGCGCGAGGTGCGCGCCCGTGTCTCCCTGCGCGGTCTGAAAGACAGCACTGAACTCAA
ACAGACACTGAAAGACGTGCTGTATGAGCTGATCGCGCCGCTGGAAGTACCGCTCGACACCAGCCAGGGCAAGCCGTTCG
TCATCATGATGGCCGGGGTCAACGGCGCCGGCAAGACCACCTCCATCGGCAAACTGGCCAAGTACTTCCAGAATCAGAAC
AAATCCGTGTTGCTGGCTGCCGGCGACACCTTCCGTGCCGCGGCGCGCGAACAGCTGATGGAATGGGGCGAACGCAACAA
TGTGACCGTCATTACCCAGCAGGGTGGCGACTCCGCCGCCGTTTGCTTTGATGCCATCAACTCGGCCAAGGCCCGCGGCA
TCGATATCGTGCTGGCCGATACGGCCGGCCGCCTGCCGACTCAGCTGCACCTGATGGAAGAAATCCGCAAGGTCAAGCGC
GTCATCCAGAAGGCGCTGCCCGAGGCACCGCAGGAGGTCGTTCTGGTGCTGGATGCCAACATCGGCCAGAACGCCCTCAA
TCAGGTCAAGGTGTTTGACGAGGCGCTGGGGCTGACCGGCCTGATCCTGACCAAGCTAGACGGTACGGCCAAGGGAGGCA
TCATCGCCGCCATCGCCAAGCAGCACCCGGTTCCACTGCGCTTCATCGGCGTCGGTGAAGGTCTGGACGATCTGCGCCCC
TTCTCGGCCCGTGACTACATCGATGCACTGTTCGATTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(132-331)

SRP54-type protein, helical bundle domain (SRP54_N)

(48-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

75

90.361

0.678