Detailed information NTG0532582

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: JNO49_RS19565
• Genome accession: NZ_CP069162
• Coordinates: 4184338..4185345 (+)
• Length: 335 a.a.
• NCBI ID: WP_028536825.1
• Uniprot ID: -
• Organism: Paludibacterium yongneupense strain BCRC 80531
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4179338..4190345

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JNO49_RS19515	rplK	4179979..4180410 (-)	432	WP_028536233.1	50S ribosomal protein L11	-
JNO49_RS19520	nusG	4180507..4181040 (-)	534	WP_028536232.1	transcription termination/antitermination protein NusG	-
JNO49_RS19525	secE	4181033..4181395 (-)	363	WP_028536231.1	preprotein translocase subunit SecE	-
JNO49_RS19535	tuf	4181553..4182743 (-)	1191	WP_215796677.1	elongation factor Tu	-
JNO49_RS19555	-	4183240..4183491 (-)	252	WP_028536827.1	YfhL family 4Fe-4S dicluster ferredoxin	-
JNO49_RS19560	rsmD	4183570..4184115 (-)	546	WP_028536826.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
JNO49_RS19565	pilA	4184338..4185345 (+)	1008	WP_028536825.1	signal recognition particle-docking protein FtsY	Machinery gene
JNO49_RS19570	ftsE	4185400..4186053 (+)	654	WP_028536824.1	cell division ATP-binding protein FtsE	-
JNO49_RS19575	ftsX	4186050..4186958 (+)	909	WP_028536823.1	permease-like cell division protein FtsX	-
JNO49_RS19580	rpoH	4187110..4187958 (+)	849	WP_028536822.1	RNA polymerase sigma factor RpoH	-
JNO49_RS19585	-	4188042..4189823 (-)	1782	WP_028536821.1	O-antigen ligase family protein	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 35763.20 Da
• Isoelectric Point: 6.1543

>NTDB_id=532582 JNO49_RS19565 WP_028536825.1 4184338..4185345(+) (pilA) [Paludibacterium yongneupense strain BCRC 80531]
MFSFFKKKPQDDAAPVSEPVSSAPDASPAGIAQRPAWTERLKAGLAKTRDRLGKQMAGLFGGGKIDDELYDELEAALLTA
DMGVDATQHLLAVVRERVSLRGLKDASELKQALKDALTELILPLEVPLDVSGHTPYVIMLAGVNGAGKTTSIGKLAKYFQ
QQGKSVLLAAGDTFRAAAREQLVAWGERNDVTVIAQQGGDAAAVCFDAINAARARGIDVVLADTAGRLPTQLHLMEEIRK
VKRVIQKALPEAPHEIILVLDANIGQNAISQVKVFDDALGLTGLILTKLDGTAKGGVIAAIAKQRPIPLRFIGVGESIDD
LRPFSARDYIDALFD

Nucleotide

• Length: 1008 bp

>NTDB_id=532582 JNO49_RS19565 WP_028536825.1 4184338..4185345(+) (pilA) [Paludibacterium yongneupense strain BCRC 80531]
ATGTTCAGCTTCTTCAAGAAAAAACCCCAGGATGACGCGGCCCCCGTCTCCGAACCCGTCTCCTCCGCGCCTGACGCATC
CCCGGCCGGCATCGCGCAGCGCCCGGCCTGGACCGAACGGCTGAAAGCCGGACTCGCCAAAACGCGCGACCGTCTGGGCA
AGCAGATGGCGGGCCTGTTCGGTGGCGGCAAGATCGACGATGAGCTCTATGACGAGCTCGAAGCCGCGCTGCTGACTGCC
GACATGGGGGTCGATGCGACGCAGCATCTGCTGGCCGTGGTGCGCGAACGGGTCAGCTTGCGCGGATTGAAGGATGCATC
CGAACTCAAACAGGCGTTGAAAGATGCGCTTACCGAGCTGATCCTTCCCCTGGAAGTTCCGCTCGACGTGAGCGGGCACA
CACCGTATGTCATCATGCTCGCCGGCGTCAACGGCGCCGGCAAGACCACCTCGATCGGCAAACTGGCCAAATACTTCCAG
CAGCAGGGCAAATCGGTCCTGCTCGCCGCCGGCGACACCTTCCGTGCCGCCGCACGCGAACAGCTGGTCGCCTGGGGCGA
GCGCAACGACGTCACCGTCATTGCGCAACAGGGCGGCGATGCCGCTGCCGTATGCTTCGATGCGATCAATGCGGCGCGCG
CGCGCGGCATTGACGTCGTTCTCGCCGACACCGCCGGACGTCTGCCGACCCAGTTGCATCTGATGGAAGAAATCCGCAAG
GTCAAGCGTGTCATACAAAAAGCCCTGCCCGAGGCTCCGCACGAGATTATTCTGGTGCTGGATGCCAATATCGGACAAAA
CGCGATCAGCCAGGTCAAGGTTTTCGACGATGCACTCGGCCTGACCGGCCTGATACTGACCAAGCTCGACGGCACGGCCA
AGGGGGGAGTCATCGCGGCCATCGCCAAGCAGCGCCCCATCCCCTTGCGCTTCATCGGCGTAGGCGAGAGCATCGACGAT
CTGCGCCCGTTCTCGGCGCGCGATTACATCGACGCCCTGTTCGACTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (52-117)

• SRP54-type protein, GTPase domain (SRP54) (136-334)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	69.136	96.716	0.669