Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   JNO49_RS17175 Genome accession   NZ_CP069162
Coordinates   3696425..3697822 (+) Length   465 a.a.
NCBI ID   WP_028537022.1    Uniprot ID   -
Organism   Paludibacterium yongneupense strain BCRC 80531     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3691425..3702822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNO49_RS17150 - 3693085..3694065 (+) 981 WP_028537027.1 KpsF/GutQ family sugar-phosphate isomerase -
  JNO49_RS17155 - 3694074..3694598 (+) 525 WP_028537026.1 HAD family hydrolase -
  JNO49_RS17160 lptC 3694595..3695155 (+) 561 WP_028537025.1 LPS export ABC transporter periplasmic protein LptC -
  JNO49_RS17165 lptA 3695145..3695693 (+) 549 WP_028537024.1 lipopolysaccharide transport periplasmic protein LptA -
  JNO49_RS17170 lptB 3695690..3696418 (+) 729 WP_028537023.1 LPS export ABC transporter ATP-binding protein -
  JNO49_RS17175 rpoN/rpoN1 3696425..3697822 (+) 1398 WP_028537022.1 RNA polymerase factor sigma-54 Machinery gene
  JNO49_RS17180 raiA 3697892..3698206 (+) 315 WP_028537021.1 ribosome-associated translation inhibitor RaiA -
  JNO49_RS17185 ptsN 3698330..3698791 (+) 462 WP_028537020.1 PTS IIA-like nitrogen regulatory protein PtsN -
  JNO49_RS17190 hprK 3698784..3699740 (+) 957 WP_028537019.1 HPr(Ser) kinase/phosphatase -
  JNO49_RS17195 rapZ 3699721..3700560 (+) 840 WP_028537018.1 RNase adapter RapZ -
  JNO49_RS17200 - 3700602..3701231 (+) 630 WP_028537017.1 flavin prenyltransferase UbiX -
  JNO49_RS17205 - 3701218..3702720 (+) 1503 WP_084637710.1 NAD(P)H-hydrate dehydratase -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 52154.89 Da        Isoelectric Point: 4.6780

>NTDB_id=532578 JNO49_RS17175 WP_028537022.1 3696425..3697822(+) (rpoN/rpoN1) [Paludibacterium yongneupense strain BCRC 80531]
MKQSLQLRISQHLTLTPQLQQSIKLLQLSTIDLQTEVERFLLENPLLEKGDEEGASSPDATPQEETAGTSEDGKDSSSSE
GELTDWGSGRSRGSDDDEYDPMFNVPAPRTLREHLLAQLGEVAICDRDEAIVHLLIEELDEDGYLPLSLEEIGASLPPEL
EIEQDELAIGLRMLQQFEPVGVGARSLSESLRLQLERLPDSETRRLADIIIEHHLALLGNRDYTRLKRQLGVDDETLRQA
QLLIATLNPRPANGFGADDTHYIVPDVVVRKRKGRWVAELNQGAIPRLRVNQMYARMLSENRGQGGELSGRLQEARWLVK
NIQQRFDTILKVSEAIVERQQSFFESGDVAMRPMILRDIADELGLHESTVSRVTTQKYLLCPSGLYELKYFFGSSLETDS
GAECSATAIKAHLRRLIESEDRGKPLSDSALADELGRQGIQVARRTVAKYREAMQIPPVNMRKTL

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=532578 JNO49_RS17175 WP_028537022.1 3696425..3697822(+) (rpoN/rpoN1) [Paludibacterium yongneupense strain BCRC 80531]
ATGAAGCAGTCGTTACAGCTCCGGATCTCTCAGCATCTTACGCTGACACCCCAGTTGCAGCAGTCGATAAAACTGCTGCA
ATTGTCCACCATCGACCTCCAAACCGAAGTCGAACGGTTTCTGCTGGAAAATCCGCTACTGGAAAAGGGCGACGAAGAAG
GCGCCTCCTCCCCGGACGCGACGCCGCAGGAGGAAACTGCCGGTACGAGCGAGGACGGCAAGGACAGCTCGTCTTCGGAA
GGCGAACTGACCGATTGGGGCAGCGGGCGCAGTCGCGGCAGCGACGACGACGAGTACGATCCCATGTTCAACGTGCCGGC
TCCGCGCACGCTTCGCGAACACCTGCTCGCCCAGTTGGGAGAGGTTGCGATCTGTGACCGTGACGAAGCCATCGTGCACC
TGCTGATCGAGGAGCTGGACGAAGACGGCTACCTGCCGCTATCGCTGGAAGAAATCGGCGCCAGCCTGCCGCCCGAGCTA
GAAATAGAGCAGGACGAGCTGGCGATCGGGCTGCGCATGCTGCAGCAGTTCGAACCGGTCGGCGTCGGGGCCCGTTCGCT
GTCGGAATCCTTGCGCCTGCAGCTGGAACGGCTGCCCGACTCTGAGACGCGCCGTCTGGCAGACATCATCATCGAGCACC
ACCTGGCCTTGCTCGGCAACCGCGACTATACCCGCCTCAAGCGTCAGCTCGGGGTGGACGACGAAACGTTGCGCCAGGCC
CAGCTGCTGATCGCCACGCTCAACCCGCGCCCGGCGAACGGCTTCGGCGCGGACGACACCCACTATATCGTCCCCGACGT
CGTCGTCAGGAAACGCAAAGGGCGCTGGGTCGCCGAACTCAACCAGGGAGCGATCCCACGGTTGAGAGTCAATCAGATGT
ACGCGCGGATGCTGTCCGAAAACCGGGGACAGGGCGGTGAATTGTCGGGCCGACTGCAAGAAGCGCGCTGGTTGGTCAAG
AATATCCAGCAGCGATTTGACACCATACTCAAAGTATCAGAAGCTATTGTTGAAAGGCAGCAATCGTTCTTTGAATCCGG
TGACGTCGCCATGCGACCGATGATCCTGCGGGACATCGCCGACGAACTCGGCCTGCACGAGTCCACGGTCTCTCGAGTCA
CCACTCAAAAATATCTTCTGTGCCCCAGCGGCCTCTATGAGCTGAAGTACTTCTTCGGCAGCTCGCTGGAAACCGACAGC
GGCGCCGAATGCTCGGCCACCGCCATCAAGGCCCACCTCAGACGCCTGATCGAGTCGGAAGATCGCGGCAAACCCCTGTC
GGATAGCGCCCTGGCCGACGAGCTCGGCCGCCAGGGCATTCAAGTTGCCAGACGCACGGTGGCGAAGTATCGTGAAGCTA
TGCAGATACCGCCCGTGAACATGAGAAAAACACTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(107-294)

Sigma-54, DNA binding domain (Sigma54_DBD)

(309-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

53.8

100

0.578