Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JNO49_RS15270 Genome accession   NZ_CP069162
Coordinates   3300966..3302321 (-) Length   451 a.a.
NCBI ID   WP_028535745.1    Uniprot ID   -
Organism   Paludibacterium yongneupense strain BCRC 80531     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3295966..3307321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNO49_RS15245 - 3296570..3297817 (-) 1248 WP_028535750.1 lipoprotein-releasing ABC transporter permease subunit -
  JNO49_RS15250 - 3297839..3298051 (-) 213 WP_028535749.1 hypothetical protein -
  JNO49_RS15255 - 3298092..3298793 (-) 702 WP_051229336.1 C40 family peptidase -
  JNO49_RS15260 - 3298854..3300536 (+) 1683 WP_028535747.1 AarF/ABC1/UbiB kinase family protein -
  JNO49_RS15265 - 3300629..3301012 (+) 384 WP_028535746.1 DUF2325 domain-containing protein -
  JNO49_RS15270 radA 3300966..3302321 (-) 1356 WP_028535745.1 DNA repair protein RadA Machinery gene
  JNO49_RS15275 - 3302330..3302842 (-) 513 WP_028535744.1 hypothetical protein -
  JNO49_RS15280 - 3302845..3303615 (-) 771 WP_211222815.1 SDR family oxidoreductase -
  JNO49_RS15285 hpnE 3303612..3304871 (-) 1260 WP_028535742.1 hydroxysqualene dehydroxylase HpnE -
  JNO49_RS15290 hpnD 3304868..3305713 (-) 846 WP_028535741.1 presqualene diphosphate synthase HpnD -
  JNO49_RS15295 hpnC 3305740..3306546 (-) 807 WP_028535740.1 squalene synthase HpnC -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48456.69 Da        Isoelectric Point: 6.8795

>NTDB_id=532576 JNO49_RS15270 WP_028535745.1 3300966..3302321(-) (radA) [Paludibacterium yongneupense strain BCRC 80531]
MAKIKTVFHCSDCGGESPKWQGQCPHCGSWNTLSESQATEAAGPARFQSWAAAAEVQCLSDVRTEALPREATGIDELDRV
LGGGMVRGAVVLIGGDPGIGKSTLLLQALARIGEQRRVLYVSGEESAQQTALRASRLALDPSKVRLLAEIRLESILAVLK
REAPEFVVIDSIQTLYTDRVTSAPGSVSQVRECAAQLTRMAKESGTTIVLVGHVTKEGALAGPRVLEHMVDTVLYFEGDS
HSSYRMIRAIKNRFGAVNELGIFAMTERGLKGVSNPSAIFLSSWRDDVSGSCVLVTQEGSRPLLVEVQALVDDAHGFQPR
RLAVGLEQNRLGMLLAVLHRHAGVACFESDVFLNAVGGVRISEPAADLAVILAIVSSLRNRPLPEKLVVFGEVGLAGEVR
PVARGQERLREAAKLGFTRAVVPLANCPRQPIEGLEVIGVERLGEAVDYCR

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=532576 JNO49_RS15270 WP_028535745.1 3300966..3302321(-) (radA) [Paludibacterium yongneupense strain BCRC 80531]
ATGGCCAAGATCAAGACGGTATTCCACTGCAGCGACTGTGGTGGCGAATCTCCGAAGTGGCAGGGACAGTGCCCGCATTG
CGGCAGCTGGAATACCTTGAGCGAGTCGCAGGCGACCGAAGCGGCCGGGCCTGCCCGCTTCCAGTCCTGGGCCGCTGCCG
CCGAAGTGCAATGCCTGTCCGATGTGCGCACCGAAGCCCTGCCGCGCGAAGCGACCGGTATCGATGAGCTCGATCGCGTA
CTCGGGGGGGGAATGGTGCGCGGCGCCGTGGTCCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACGCTGCTGCTGCA
GGCGCTGGCTCGCATTGGCGAGCAGCGGCGCGTGCTGTATGTCTCGGGTGAAGAGTCGGCGCAGCAGACGGCCCTGCGCG
CGAGCCGCCTGGCGCTGGACCCGAGCAAGGTGCGGCTGTTGGCGGAAATCCGCCTGGAGTCGATTCTCGCCGTTCTCAAG
CGCGAGGCACCTGAATTTGTGGTCATCGATTCGATCCAGACGCTGTACACCGATCGGGTGACCTCGGCGCCAGGGTCGGT
GTCGCAGGTGCGCGAGTGCGCGGCGCAGTTGACGCGCATGGCCAAGGAAAGCGGCACCACCATCGTCCTGGTCGGGCACG
TGACCAAGGAAGGCGCGCTGGCCGGGCCGCGCGTGCTCGAACATATGGTTGACACGGTGCTCTATTTCGAGGGCGATTCG
CACTCCAGCTATCGCATGATACGGGCGATCAAGAACCGCTTCGGCGCGGTCAACGAACTCGGTATTTTTGCGATGACCGA
GCGCGGCCTGAAGGGGGTGAGCAATCCGTCCGCGATTTTTCTTTCATCGTGGCGTGATGATGTTTCCGGTTCCTGTGTAC
TGGTGACGCAGGAGGGGAGTCGCCCCCTGCTGGTCGAGGTACAGGCGCTGGTCGACGATGCGCATGGCTTTCAGCCGCGC
AGGCTGGCCGTCGGCCTTGAACAGAACAGGCTGGGCATGCTGCTGGCGGTGCTGCACCGTCATGCGGGCGTTGCCTGCTT
CGAGTCGGATGTGTTTCTCAATGCGGTCGGCGGCGTACGCATCAGCGAACCGGCGGCCGATCTGGCCGTGATTCTTGCCA
TCGTGTCGTCCCTGCGCAACCGGCCGTTGCCTGAAAAGCTGGTGGTGTTCGGCGAGGTGGGGCTGGCCGGCGAAGTCCGT
CCTGTCGCGCGCGGTCAGGAACGCTTGCGCGAGGCCGCCAAGCTCGGCTTCACCCGTGCCGTCGTTCCACTCGCCAATTG
CCCGCGTCAGCCGATCGAGGGACTGGAAGTCATCGGGGTCGAGCGGCTCGGCGAAGCGGTCGACTATTGTCGCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-218)

Subunit ChlI of Mg-chelatase (ChlI)

(363-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.331

100

0.506
  radA Streptococcus mitis SK321

47.884

99.557

0.477
  radA Streptococcus pneumoniae Rx1

47.345

100

0.474
  radA Streptococcus pneumoniae TIGR4

47.345

100

0.474
  radA Streptococcus pneumoniae D39

47.345

100

0.474
  radA Streptococcus pneumoniae R6

47.345

100

0.474
  radA Streptococcus mitis NCTC 12261

47.545

99.335

0.472