Detailed information NTG0532561

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: JNO50_RS17885
• Genome accession: NZ_CP069161
• Coordinates: 3864909..3866012 (+)
• Length: 367 a.a.
• NCBI ID: WP_189532133.1
• Uniprot ID: A0A918P0P1
• Organism: Paludibacterium paludis strain BCRC 80514
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3859909..3871012

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JNO50_RS17835	rplK	3860453..3860884 (-)	432	WP_189536856.1	50S ribosomal protein L11	-
JNO50_RS17840	nusG	3860987..3861520 (-)	534	WP_189536855.1	transcription termination/antitermination protein NusG	-
JNO50_RS17845	secE	3861523..3861876 (-)	354	WP_189536852.1	preprotein translocase subunit SecE	-
JNO50_RS17855	tuf	3862030..3863220 (-)	1191	WP_215796421.1	elongation factor Tu	-
JNO50_RS17875	-	3863706..3863957 (-)	252	WP_189532138.1	YfhL family 4Fe-4S dicluster ferredoxin	-
JNO50_RS17880	rsmD	3864025..3864612 (-)	588	WP_189532135.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
JNO50_RS17885	pilA	3864909..3866012 (+)	1104	WP_189532133.1	signal recognition particle-docking protein FtsY	Machinery gene
JNO50_RS17890	ftsE	3866034..3866687 (+)	654	WP_189532131.1	cell division ATP-binding protein FtsE	-
JNO50_RS17895	ftsX	3866684..3867592 (+)	909	WP_189532128.1	permease-like cell division protein FtsX	-
JNO50_RS17900	rpoH	3867729..3868592 (+)	864	WP_189532126.1	RNA polymerase sigma factor RpoH	-
JNO50_RS17905	-	3868707..3869156 (+)	450	WP_189532124.1	hypothetical protein	-
JNO50_RS17910	-	3869189..3870979 (-)	1791	WP_189532122.1	O-antigen ligase family protein	-

Sequence

Protein

• Length: 367 a.a.
• Molecular weight: 39154.85 Da
• Isoelectric Point: 4.9709

>NTDB_id=532561 JNO50_RS17885 WP_189532133.1 3864909..3866012(+) (pilA) [Paludibacterium paludis strain BCRC 80514]
MFSFFKKKPKPADTADIPASDETGIDTFAEPADQAAPPGDAEPAPSTHTEDPGTPAENDTPAPLKTMSWTQRLKAGLSKT
RDRLGKQLAGLFGGGKIDEELYEELETVLLTADMGIDATVHLLGDVRERVSLKGLKDAAELKETLKESLTELIQPLEKPL
DTQGRKPFVIMMAGVNGAGKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLIAWGERNNVTVIAQEGGDAAAVCFDA
IKAAQARGIDIVLADTAGRLPTQLHLMEEIKKVKRVIQKALPDAPHEIVLVLDANIGQNAISQVKVFDDALGLTGLILTK
LDGTAKGGVIAAIAKQRPIPLRFIGVGEGIDDLRPFDAKSYVDALFD

Nucleotide

• Length: 1104 bp

>NTDB_id=532561 JNO50_RS17885 WP_189532133.1 3864909..3866012(+) (pilA) [Paludibacterium paludis strain BCRC 80514]
ATGTTCAGTTTCTTCAAGAAAAAACCCAAACCCGCCGATACCGCCGACATTCCGGCCTCCGACGAGACGGGCATCGACAC
CTTCGCCGAACCGGCAGATCAAGCCGCGCCCCCCGGTGATGCCGAACCTGCGCCGTCCACGCACACAGAGGACCCCGGGA
CGCCCGCCGAAAACGACACTCCCGCCCCCCTCAAGACAATGAGCTGGACTCAGCGCCTCAAGGCCGGACTCTCCAAGACC
CGCGACCGTCTGGGCAAACAGCTGGCCGGTCTGTTCGGAGGGGGCAAGATCGACGAAGAGCTCTATGAGGAGCTGGAAAC
GGTTCTGTTGACGGCGGACATGGGGATAGACGCTACCGTGCACCTGCTCGGGGATGTGCGCGAACGCGTTTCGCTCAAAG
GACTCAAGGATGCCGCCGAGTTGAAGGAAACGCTCAAAGAATCGCTGACCGAGCTGATCCAGCCCCTTGAAAAGCCCCTC
GACACCCAGGGACGCAAACCGTTCGTGATCATGATGGCCGGCGTCAACGGCGCGGGCAAAACCACCTCGATCGGCAAACT
CGCCAAATACTTCCAGTCGCAGGGCAAAAGCGTGCTCCTCGCCGCCGGCGACACGTTCCGGGCCGCCGCTCGCGAGCAAC
TGATCGCCTGGGGCGAACGCAACAATGTGACCGTCATCGCCCAGGAGGGTGGCGACGCCGCCGCGGTCTGCTTTGACGCC
ATCAAGGCGGCCCAGGCGCGCGGTATCGATATCGTGCTGGCAGACACGGCAGGCCGCTTGCCGACCCAACTGCATCTGAT
GGAAGAGATCAAGAAGGTCAAGCGCGTCATTCAGAAAGCGCTGCCCGACGCGCCGCACGAGATCGTGCTGGTGCTGGATG
CCAACATCGGCCAGAACGCCATCAGTCAAGTCAAGGTTTTCGACGATGCGCTCGGTCTGACCGGCCTGATTCTCACCAAG
CTCGACGGCACGGCCAAGGGCGGAGTGATCGCCGCCATCGCCAAGCAACGTCCGATTCCCCTGCGGTTCATCGGGGTGGG
CGAAGGTATCGACGATCTGCGGCCGTTCGATGCCAAGAGTTATGTCGATGCCCTGTTCGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (167-366)

• SRP54-type protein, helical bundle domain (SRP54_N) (84-149)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	75.828	82.289	0.624