Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K9U08_RS06845 Genome accession   NZ_CP083503
Coordinates   1350863..1352290 (+) Length   475 a.a.
NCBI ID   WP_021523141.1    Uniprot ID   -
Organism   Escherichia coli strain elppa5     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1345863..1357290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9U08_RS06805 (K9U08_06810) yeeW 1346047..1346241 (+) 195 WP_000988600.1 DUF5983 family protein -
  K9U08_RS06810 (K9U08_06815) - 1346275..1346367 (+) 93 Protein_1349 DUF957 domain-containing protein -
  K9U08_RS26345 (K9U08_06820) - 1346656..1346793 (-) 138 Protein_1350 transposase domain-containing protein -
  K9U08_RS26350 - 1346856..1347038 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  K9U08_RS06825 (K9U08_06830) tmaR 1347139..1347468 (-) 330 WP_000450409.1 DUF496 family protein -
  K9U08_RS06830 (K9U08_06835) yeeA 1347640..1348698 (-) 1059 WP_001200890.1 FUSC family protein -
  K9U08_RS06835 (K9U08_06840) sbmC 1348896..1349369 (-) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  K9U08_RS06840 (K9U08_06845) dacD 1349488..1350654 (-) 1167 WP_228588492.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  K9U08_RS06845 (K9U08_06850) sbcB 1350863..1352290 (+) 1428 WP_021523141.1 exodeoxyribonuclease I Machinery gene
  K9U08_RS06850 (K9U08_06855) tsuB 1352333..1352560 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  K9U08_RS06855 (K9U08_06860) tsuA 1352574..1353632 (-) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  K9U08_RS06860 (K9U08_06865) plaP 1353811..1355169 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  K9U08_RS06865 (K9U08_06870) yoeI 1355159..1355221 (-) 63 WP_010723108.1 membrane protein YoeI -
  K9U08_RS06870 (K9U08_06875) yeeY 1355436..1356365 (-) 930 WP_023154044.1 LysR substrate-binding domain-containing protein -
  K9U08_RS06875 (K9U08_06880) yeeZ 1356411..1357235 (-) 825 WP_000754758.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54513.81 Da        Isoelectric Point: 5.4700

>NTDB_id=532556 K9U08_RS06845 WP_021523141.1 1350863..1352290(+) (sbcB) [Escherichia coli strain elppa5]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNVVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=532556 K9U08_RS06845 WP_021523141.1 1350863..1352290(+) (sbcB) [Escherichia coli strain elppa5]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTAATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGTCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581