Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JNO50_RS12765 Genome accession   NZ_CP069161
Coordinates   2804071..2805429 (-) Length   452 a.a.
NCBI ID   WP_215796370.1    Uniprot ID   -
Organism   Paludibacterium paludis strain BCRC 80514     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2799071..2810429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNO50_RS12740 - 2799415..2800662 (-) 1248 WP_189536689.1 lipoprotein-releasing ABC transporter permease subunit -
  JNO50_RS12745 - 2800673..2800885 (-) 213 WP_189536687.1 hypothetical protein -
  JNO50_RS12750 - 2800958..2801782 (-) 825 WP_189536685.1 C40 family peptidase -
  JNO50_RS12755 - 2801844..2803526 (+) 1683 WP_189536682.1 AarF/UbiB family protein -
  JNO50_RS12760 - 2803654..2803995 (+) 342 WP_308429828.1 DUF2325 domain-containing protein -
  JNO50_RS12765 radA 2804071..2805429 (-) 1359 WP_215796370.1 DNA repair protein RadA Machinery gene
  JNO50_RS12770 - 2805437..2805985 (-) 549 WP_189536679.1 hypothetical protein -
  JNO50_RS12775 - 2805997..2806752 (-) 756 WP_189536676.1 SDR family oxidoreductase -
  JNO50_RS12780 hpnE 2806755..2808032 (-) 1278 WP_189536674.1 hydroxysqualene dehydroxylase HpnE -
  JNO50_RS12785 hpnD 2808029..2808874 (-) 846 WP_189536671.1 presqualene diphosphate synthase HpnD -
  JNO50_RS12790 hpnC 2808914..2809738 (-) 825 WP_189536669.1 squalene synthase HpnC -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48362.63 Da        Isoelectric Point: 7.1028

>NTDB_id=532555 JNO50_RS12765 WP_215796370.1 2804071..2805429(-) (radA) [Paludibacterium paludis strain BCRC 80514]
MAKIKTVYTCGECAGQTPKWQGQCPHCGAWNTLSETVSSPASGGGRFQSWSTGSSVQLLSDVTAEEVPRDPCGIDELDRV
LGGGIVRGAVILIGGDPGIGKSTLLLQALSATGERRKVLYVSGEESPQQIALRASRLAVDPSRVRFLAEIRLEAILPAIR
KEAPEVVVIDSIQTLYTEQVTSAPGSVSQVRECAAQLTRMAKETGTAIILVGHVTKEGALAGPRVLEHMVDTVLYFEGDT
HSSYRMIRAIKNRFGAVNELGIFAMTERGLRGVSNPSAIFLSSYRDDVAGSCVLVTQEGTRPLLVEVQALVDDCHGFQPK
RLTVGLEQNRLAMLLAVLHRHAGVAAFDQDVFLNAVGGVKIAEPAADLAVILSIVSSLRNRPLPEKLVVFGEVGLAGEVR
PVARGQERLKEAAKLGFARAIVPRANAPRQPVEGLEIHAVERLEEAVAFCRG

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=532555 JNO50_RS12765 WP_215796370.1 2804071..2805429(-) (radA) [Paludibacterium paludis strain BCRC 80514]
ATGGCCAAGATAAAAACCGTATACACCTGCGGCGAATGCGCGGGGCAGACGCCCAAGTGGCAGGGACAGTGCCCGCATTG
CGGCGCCTGGAACACCCTGAGCGAAACCGTTTCCTCCCCCGCCTCCGGCGGCGGTCGCTTTCAGTCCTGGTCGACCGGCT
CTTCGGTGCAGTTGCTCTCTGATGTGACCGCCGAGGAAGTGCCGCGCGATCCGTGCGGCATCGACGAACTGGATCGCGTG
CTCGGCGGCGGTATCGTGCGCGGCGCGGTGATCCTCATCGGCGGCGACCCCGGCATCGGCAAATCCACGCTGCTCTTGCA
GGCGCTGTCGGCCACCGGCGAGCGCCGCAAGGTGCTGTACGTGTCCGGCGAAGAATCCCCCCAGCAGATCGCCCTGCGCG
CCTCGCGCCTCGCCGTCGATCCGTCGCGGGTGCGTTTTTTGGCGGAGATCCGGCTTGAGGCGATCTTGCCGGCCATCCGC
AAGGAGGCGCCGGAAGTCGTGGTGATCGACTCGATCCAGACCCTGTACACCGAGCAGGTGACCTCGGCGCCGGGCTCGGT
GTCTCAGGTGCGCGAATGCGCCGCCCAGCTGACGCGCATGGCCAAGGAAACCGGCACCGCCATCATCCTCGTCGGCCACG
TCACCAAGGAAGGCGCGCTGGCCGGTCCGCGCGTGCTCGAGCACATGGTCGACACGGTGCTGTACTTCGAAGGCGACACG
CATTCGAGTTACCGGATGATCCGCGCCATCAAGAACCGTTTCGGCGCGGTCAACGAGCTGGGGATTTTCGCGATGACCGA
ACGCGGACTGCGCGGCGTCTCCAACCCCTCGGCGATTTTTCTGTCGTCCTACCGCGACGACGTGGCCGGCTCCTGCGTGC
TGGTCACCCAGGAGGGCACGCGTCCGCTGCTGGTCGAAGTGCAGGCGCTGGTCGATGATTGCCACGGCTTCCAGCCCAAG
CGGCTGACCGTCGGGCTCGAGCAGAACCGCCTGGCGATGCTGCTGGCCGTGCTGCACCGCCACGCCGGCGTGGCGGCGTT
CGATCAGGATGTGTTTCTCAATGCCGTCGGCGGCGTGAAGATCGCCGAGCCGGCGGCGGATCTCGCCGTCATCCTTTCCA
TCGTGTCGTCGTTGCGCAATCGCCCCCTGCCGGAAAAACTCGTCGTATTCGGCGAGGTGGGACTCGCCGGCGAGGTGCGG
CCGGTGGCGCGGGGCCAGGAGCGTCTCAAGGAGGCGGCCAAGCTCGGTTTTGCCCGCGCCATCGTTCCCCGGGCGAACGC
TCCGCGACAGCCGGTGGAGGGCCTGGAAATCCATGCGGTGGAGCGTCTCGAAGAGGCCGTGGCGTTCTGCCGCGGCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-218)

Subunit ChlI of Mg-chelatase (ChlI)

(362-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.89

100

0.5
  radA Streptococcus pneumoniae Rx1

47.877

93.805

0.449
  radA Streptococcus pneumoniae D39

47.877

93.805

0.449
  radA Streptococcus pneumoniae R6

47.877

93.805

0.449
  radA Streptococcus pneumoniae TIGR4

47.877

93.805

0.449
  radA Streptococcus mitis SK321

47.877

93.805

0.449
  radA Streptococcus mitis NCTC 12261

47.877

93.805

0.449