Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JM656_RS13605 Genome accession   NZ_CP069159
Coordinates   2855148..2855762 (-) Length   204 a.a.
NCBI ID   WP_203358247.1    Uniprot ID   -
Organism   Citrobacter sp. R56     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2850148..2860762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM656_RS13590 (JM656_13590) helD 2850375..2852429 (-) 2055 WP_203358244.1 DNA helicase IV -
  JM656_RS13595 (JM656_13595) - 2852552..2852998 (+) 447 WP_203358245.1 YccF domain-containing protein -
  JM656_RS13600 (JM656_13600) yccS 2853017..2855170 (+) 2154 WP_203358246.1 YccS family putative transporter -
  JM656_RS13605 (JM656_13605) sxy/tfoX 2855148..2855762 (-) 615 WP_203358247.1 TfoX/Sxy family DNA transformation protein Regulator
  JM656_RS13610 (JM656_13610) sulA 2855980..2856489 (+) 510 WP_203358248.1 SOS-induced cell division inhibitor SulA -
  JM656_RS13615 (JM656_13615) ompA 2856844..2857890 (+) 1047 WP_192611803.1 porin OmpA -
  JM656_RS13620 (JM656_13620) matP 2857977..2858429 (-) 453 WP_203358249.1 macrodomain Ter protein MatP -
  JM656_RS13625 (JM656_13625) - 2858615..2860375 (+) 1761 WP_203358250.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23577.17 Da        Isoelectric Point: 9.3939

>NTDB_id=532532 JM656_RS13605 WP_203358247.1 2855148..2855762(-) (sxy/tfoX) [Citrobacter sp. R56]
MRAHSYSRIYKSQEYLASLGTIGYRSLFGSYSLSIGDTVFAMVANGELYLRACEQSVQYCVKHPPVWLTFMKRGRQVMLH
YYRVDESLWCDQQQLVRLSQYSLDAAVKEKHSRFSQHRLKDLPNMTFHLEILLNEAGIKDESTLRNLGAKMSWLRLRHLN
KSLTVKILYSLEGAILGVHEAALPAARRQELADWVQSLMTEQGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=532532 JM656_RS13605 WP_203358247.1 2855148..2855762(-) (sxy/tfoX) [Citrobacter sp. R56]
ATGAGAGCACATTCTTATAGTCGAATCTATAAATCTCAAGAATACCTGGCTTCACTGGGCACGATTGGCTACCGCTCGCT
GTTTGGCAGTTACAGTTTGAGTATTGGGGATACTGTCTTTGCGATGGTTGCTAATGGTGAGTTATACCTTCGTGCCTGCG
AGCAAAGCGTACAGTACTGTGTGAAACATCCGCCTGTCTGGCTGACGTTTATGAAGCGCGGACGTCAGGTAATGCTCCAC
TATTATCGGGTGGATGAAAGCTTGTGGTGCGACCAGCAGCAACTGGTGCGCTTGTCACAGTATTCGCTGGATGCGGCGGT
AAAGGAAAAGCATTCCCGCTTTTCGCAACATCGTCTTAAGGATTTACCGAATATGACCTTTCATCTGGAGATCCTCCTGA
ACGAAGCGGGGATTAAAGATGAGAGCACATTACGGAATCTGGGGGCGAAAATGAGTTGGCTAAGGCTTCGTCATCTTAAT
AAATCCCTGACGGTGAAAATTCTCTATTCCCTTGAAGGGGCGATTCTCGGGGTACATGAAGCCGCGCTCCCGGCGGCGCG
CCGCCAGGAGCTTGCAGACTGGGTTCAGTCACTTATGACAGAACAGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

71.078

100

0.711