Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   K9U09_RS14450 Genome accession   NZ_CP083497
Coordinates   3008146..3009138 (-) Length   330 a.a.
NCBI ID   WP_000224455.1    Uniprot ID   -
Organism   Escherichia coli strain elppa6     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3003146..3014138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9U09_RS14440 (K9U09_14455) yieP 3006038..3006730 (+) 693 WP_001131169.1 FadR/GntR family transcriptional regulator -
  K9U09_RS14445 (K9U09_14460) mdtD 3006753..3008180 (+) 1428 WP_001280864.1 multidrug transporter subunit MdtD -
  K9U09_RS14450 (K9U09_14465) cytR 3008146..3009138 (-) 993 WP_000224455.1 ribose operon transcriptional repressor RbsR Regulator
  K9U09_RS14455 (K9U09_14470) rbsK 3009142..3010071 (-) 930 WP_001300603.1 ribokinase -
  K9U09_RS14460 (K9U09_14475) rbsB 3010197..3011087 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  K9U09_RS14465 (K9U09_14480) rbsC 3011112..3012077 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  K9U09_RS14470 (K9U09_14485) rbsA 3012082..3013587 (-) 1506 WP_000387753.1 ribose ABC transporter ATP-binding protein RbsA -
  K9U09_RS14475 (K9U09_14490) rbsD 3013595..3014014 (-) 420 WP_109552182.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36570.85 Da        Isoelectric Point: 5.2141

>NTDB_id=532507 K9U09_RS14450 WP_000224455.1 3008146..3009138(-) (cytR) [Escherichia coli strain elppa6]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAISAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLSIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=532507 K9U09_RS14450 WP_000224455.1 3008146..3009138(-) (cytR) [Escherichia coli strain elppa6]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTTCCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAGCATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.349

100

0.376
  cytR Vibrio cholerae C6706

39.088

93.03

0.364