Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   JNE38_RS29900 Genome accession   NZ_CP069127
Coordinates   6032051..6033004 (-) Length   317 a.a.
NCBI ID   WP_203354642.1    Uniprot ID   -
Organism   Brevibacillus choshinensis strain HPD31-SP3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6027051..6038004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE38_RS29880 (JNE38_29880) - 6027363..6029081 (-) 1719 WP_203354638.1 GMC family oxidoreductase -
  JNE38_RS29885 (JNE38_29885) - 6029256..6030242 (-) 987 WP_275296666.1 siderophore ABC transporter substrate-binding protein -
  JNE38_RS29890 (JNE38_29890) - 6030358..6031116 (-) 759 WP_203354640.1 ABC transporter ATP-binding protein -
  JNE38_RS29895 (JNE38_29895) - 6031110..6032054 (-) 945 WP_203354641.1 iron chelate uptake ABC transporter family permease subunit -
  JNE38_RS29900 (JNE38_29900) ceuB 6032051..6033004 (-) 954 WP_203354642.1 ABC transporter permease Machinery gene
  JNE38_RS29905 (JNE38_29905) - 6033259..6033864 (+) 606 WP_203354643.1 PadR family transcriptional regulator -
  JNE38_RS29910 (JNE38_29910) - 6033922..6035292 (-) 1371 WP_203354644.1 MATE family efflux transporter -
  JNE38_RS29915 (JNE38_29915) - 6035491..6035850 (+) 360 WP_203354645.1 response regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35291.79 Da        Isoelectric Point: 9.8333

>NTDB_id=532455 JNE38_RS29900 WP_203354642.1 6032051..6033004(-) (ceuB) [Brevibacillus choshinensis strain HPD31-SP3]
MKKRYLVIALILLSIASLFIGVKDISPLELFDLTEEKTQVMWISRIPRLISIIIAGVSMSIIGLIMQQLTRNKFVSPTTA
GTEDSVRFGILVSLMVFTDASPWLKLLVAFVFALLGTFIFMKILDRIKFKDSIFIPLVGLMFGNIVGSITMFFAYKYDLI
RNMTAWLHGDFSSIMKGSYELLYLSIPLVIIAYLFANKFTIAGMGEEFAINLGLNYKQVVNIGLVIVAMVSSLVILTVGT
IPFLGLIIPNIVTIYLGDNLKKNLSHTALLGAVFVLCCDILGRLIIFPYEISIGLMVGVVGSAIFIFLLMRRKAYDR

Nucleotide


Download         Length: 954 bp        

>NTDB_id=532455 JNE38_RS29900 WP_203354642.1 6032051..6033004(-) (ceuB) [Brevibacillus choshinensis strain HPD31-SP3]
ATGAAGAAGAGATATTTAGTAATAGCACTCATCCTGCTGTCGATAGCTTCCTTGTTTATCGGTGTGAAAGACATTTCCCC
ACTGGAACTGTTCGATCTCACGGAAGAGAAGACGCAGGTGATGTGGATCAGCAGAATCCCACGATTGATCAGTATCATCA
TCGCGGGTGTCAGCATGAGTATCATAGGTCTGATCATGCAGCAGCTGACGCGGAACAAGTTCGTATCGCCGACAACGGCA
GGCACGGAAGACTCTGTCCGGTTCGGGATACTGGTTTCATTGATGGTGTTTACCGACGCCAGTCCGTGGCTAAAGCTGCT
CGTGGCCTTCGTGTTTGCACTACTGGGAACATTCATCTTTATGAAGATTCTCGACAGGATCAAATTCAAAGACTCCATTT
TCATTCCGCTGGTGGGCTTGATGTTTGGCAATATCGTCGGTTCGATTACGATGTTTTTTGCCTACAAATACGACCTCATC
CGGAACATGACAGCTTGGCTGCACGGAGACTTTTCCTCGATCATGAAAGGGAGCTACGAGCTGCTCTACCTCAGCATCCC
GCTCGTCATCATCGCATACCTGTTTGCCAACAAGTTCACGATCGCGGGAATGGGTGAGGAATTTGCCATCAATCTGGGGC
TGAATTACAAACAAGTGGTCAACATCGGCCTCGTTATCGTGGCAATGGTATCTTCTCTCGTCATTCTCACGGTAGGCACG
ATTCCATTTCTGGGATTGATCATTCCGAATATCGTCACGATTTACCTGGGCGATAACCTGAAGAAGAACCTGTCTCATAC
GGCTTTGCTGGGGGCTGTGTTCGTTCTGTGCTGCGACATCTTGGGTCGCCTCATTATCTTCCCTTACGAAATTTCTATCG
GCTTGATGGTCGGTGTTGTCGGCAGCGCGATATTCATTTTCTTACTCATGAGAAGAAAGGCGTATGACCGATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.128

98.423

0.543