Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JNE38_RS18675 Genome accession   NZ_CP069127
Coordinates   3710050..3710475 (+) Length   141 a.a.
NCBI ID   WP_203255133.1    Uniprot ID   -
Organism   Brevibacillus choshinensis strain HPD31-SP3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3705050..3715475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE38_RS18655 (JNE38_18655) - 3705555..3706463 (+) 909 WP_203255129.1 DMT family transporter -
  JNE38_RS18660 (JNE38_18660) - 3706575..3706712 (+) 138 WP_203255130.1 hypothetical protein -
  JNE38_RS18665 (JNE38_18665) - 3706750..3708348 (-) 1599 WP_203255131.1 amidohydrolase -
  JNE38_RS18670 (JNE38_18670) - 3708553..3709869 (+) 1317 WP_203255132.1 MFS transporter -
  JNE38_RS18675 (JNE38_18675) nucA/comI 3710050..3710475 (+) 426 WP_203255133.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  JNE38_RS18680 (JNE38_18680) - 3710561..3711157 (-) 597 WP_203255134.1 TetR/AcrR family transcriptional regulator -
  JNE38_RS18685 (JNE38_18685) - 3711438..3712157 (+) 720 WP_203255135.1 3-ketoacyl-ACP reductase -
  JNE38_RS18690 (JNE38_18690) - 3712309..3712752 (+) 444 WP_203255136.1 MarR family transcriptional regulator -
  JNE38_RS18695 (JNE38_18695) - 3712756..3714159 (+) 1404 WP_203255137.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15639.67 Da        Isoelectric Point: 6.4650

>NTDB_id=532443 JNE38_RS18675 WP_203255133.1 3710050..3710475(+) (nucA/comI) [Brevibacillus choshinensis strain HPD31-SP3]
MQKKIILFIVALLFAIGSYFFEQHAPQTQTNSAEADYVLEFPSSKYPQTAEHIRSAIAKGQPAVCTIDRKGADENREQSL
KGVPTKPRYDRDEWPMAMCKEGGTGADIAYISPSDNRGAGSWIANQVDEYPDGTRVKIVVK

Nucleotide


Download         Length: 426 bp        

>NTDB_id=532443 JNE38_RS18675 WP_203255133.1 3710050..3710475(+) (nucA/comI) [Brevibacillus choshinensis strain HPD31-SP3]
GTGCAGAAAAAAATCATCCTCTTCATCGTCGCCCTACTGTTTGCGATCGGCTCCTATTTTTTCGAGCAGCATGCCCCGCA
GACGCAGACCAACAGCGCCGAAGCAGACTACGTGCTGGAGTTCCCCAGCAGCAAATATCCTCAGACTGCCGAGCATATAC
GCTCTGCCATCGCCAAAGGTCAACCCGCCGTTTGTACCATCGACCGCAAAGGTGCGGATGAAAACCGCGAGCAATCCCTC
AAAGGTGTGCCCACTAAGCCACGCTACGATCGAGATGAATGGCCGATGGCGATGTGCAAGGAAGGCGGTACTGGCGCGGA
TATCGCCTATATTTCCCCCTCGGATAATCGGGGCGCAGGTTCATGGATTGCCAATCAAGTGGACGAATACCCTGATGGGA
CGCGCGTAAAGATTGTCGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(44-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.8

88.652

0.504