Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | B739_RS05170 | Genome accession | NC_018609 |
| Coordinates | 1123525..1124178 (+) | Length | 217 a.a. |
| NCBI ID | WP_038693798.1 | Uniprot ID | - |
| Organism | Riemerella anatipestifer RA-CH-1 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1118525..1129178
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B739_RS05140 (B739_1048) | - | 1118888..1119265 (+) | 378 | WP_014938004.1 | group III truncated hemoglobin | - |
| B739_RS05145 (B739_1049) | dprA | 1119268..1120371 (+) | 1104 | WP_014938005.1 | DNA-processing protein DprA | Machinery gene |
| B739_RS05150 (B739_1050) | gdhA | 1120555..1121913 (+) | 1359 | WP_014938006.1 | NADP-specific glutamate dehydrogenase | - |
| B739_RS05155 (B739_1051) | - | 1122045..1122695 (+) | 651 | WP_014938007.1 | HD domain-containing protein | - |
| B739_RS05160 (B739_1052) | - | 1122747..1123298 (+) | 552 | WP_014938008.1 | hypothetical protein | - |
| B739_RS05170 (B739_1053) | comF | 1123525..1124178 (+) | 654 | WP_038693798.1 | ComF family protein | Machinery gene |
| B739_RS05175 (B739_1055) | - | 1124489..1125463 (+) | 975 | WP_004918076.1 | ribonucleotide-diphosphate reductase subunit beta | - |
| B739_RS05180 (B739_1056) | - | 1125514..1127169 (+) | 1656 | WP_014938011.1 | ribonucleoside-diphosphate reductase subunit alpha | - |
| B739_RS05185 (B739_1057) | - | 1127281..1128363 (+) | 1083 | WP_014938012.1 | serine hydrolase | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25329.43 Da Isoelectric Point: 9.4150
>NTDB_id=53244 B739_RS05170 WP_038693798.1 1123525..1124178(+) (comF) [Riemerella anatipestifer RA-CH-1]
MFLDFFLPNRCLKCNLIIPSEEIVCWACKSHINFTYNDFGGKGSFYQKVILKFPVNKAFSLMKYEKKELSQDIIHSLKYH
SIERVGKVLAHWVSENIDLSYQGIDILTSIPLHSKKQRERGYNQLHLFTKTLSQLQGIFYSHHLLKRNFYSKPQALKQKL
DREKIQNMFSVDEKVEGKHILLIDDVYTTGNTMSKAVWELLKGRDNQISILVLGLDD
MFLDFFLPNRCLKCNLIIPSEEIVCWACKSHINFTYNDFGGKGSFYQKVILKFPVNKAFSLMKYEKKELSQDIIHSLKYH
SIERVGKVLAHWVSENIDLSYQGIDILTSIPLHSKKQRERGYNQLHLFTKTLSQLQGIFYSHHLLKRNFYSKPQALKQKL
DREKIQNMFSVDEKVEGKHILLIDDVYTTGNTMSKAVWELLKGRDNQISILVLGLDD
Nucleotide
Download Length: 654 bp
>NTDB_id=53244 B739_RS05170 WP_038693798.1 1123525..1124178(+) (comF) [Riemerella anatipestifer RA-CH-1]
ATGTTTTTAGATTTTTTTCTACCAAATAGATGCCTAAAGTGTAATCTCATTATTCCTTCTGAGGAAATCGTGTGCTGGGC
TTGTAAATCTCATATCAATTTTACGTACAATGATTTTGGAGGGAAAGGGAGTTTTTATCAAAAAGTTATTCTTAAATTTC
CAGTAAATAAGGCTTTTAGTTTGATGAAATATGAGAAAAAAGAGCTGTCTCAAGATATTATACATTCCTTAAAATATCAT
TCTATAGAGCGAGTGGGTAAGGTGTTAGCCCATTGGGTTTCTGAAAATATAGATTTGTCTTATCAAGGGATAGATATATT
AACCAGCATACCGCTTCATTCTAAAAAGCAAAGAGAAAGAGGTTACAATCAGTTGCATTTGTTTACAAAGACGCTATCTC
AGCTACAGGGGATATTTTATTCTCACCATCTTCTTAAGAGAAACTTCTATTCTAAGCCTCAGGCTCTAAAACAAAAGTTG
GATAGGGAGAAAATACAAAATATGTTTTCTGTAGATGAGAAAGTAGAAGGTAAACATATCTTGCTTATAGATGATGTATA
TACCACAGGAAACACAATGAGTAAAGCAGTTTGGGAGCTACTAAAAGGAAGGGATAATCAGATAAGTATTTTGGTTTTAG
GTTTAGATGATTAG
ATGTTTTTAGATTTTTTTCTACCAAATAGATGCCTAAAGTGTAATCTCATTATTCCTTCTGAGGAAATCGTGTGCTGGGC
TTGTAAATCTCATATCAATTTTACGTACAATGATTTTGGAGGGAAAGGGAGTTTTTATCAAAAAGTTATTCTTAAATTTC
CAGTAAATAAGGCTTTTAGTTTGATGAAATATGAGAAAAAAGAGCTGTCTCAAGATATTATACATTCCTTAAAATATCAT
TCTATAGAGCGAGTGGGTAAGGTGTTAGCCCATTGGGTTTCTGAAAATATAGATTTGTCTTATCAAGGGATAGATATATT
AACCAGCATACCGCTTCATTCTAAAAAGCAAAGAGAAAGAGGTTACAATCAGTTGCATTTGTTTACAAAGACGCTATCTC
AGCTACAGGGGATATTTTATTCTCACCATCTTCTTAAGAGAAACTTCTATTCTAAGCCTCAGGCTCTAAAACAAAAGTTG
GATAGGGAGAAAATACAAAATATGTTTTCTGTAGATGAGAAAGTAGAAGGTAAACATATCTTGCTTATAGATGATGTATA
TACCACAGGAAACACAATGAGTAAAGCAGTTTGGGAGCTACTAAAAGGAAGGGATAATCAGATAAGTATTTTGGTTTTAG
GTTTAGATGATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
89.401 |
100 |
0.894 |