Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JNE38_RS12170 Genome accession   NZ_CP069127
Coordinates   2378733..2380457 (+) Length   574 a.a.
NCBI ID   WP_203356786.1    Uniprot ID   -
Organism   Brevibacillus choshinensis strain HPD31-SP3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2373733..2385457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE38_RS12150 (JNE38_12150) dxs 2374594..2376477 (+) 1884 WP_203356782.1 1-deoxy-D-xylulose-5-phosphate synthase -
  JNE38_RS12155 (JNE38_12155) - 2376474..2377292 (+) 819 WP_203356783.1 TlyA family RNA methyltransferase -
  JNE38_RS12160 (JNE38_12160) - 2377405..2378262 (+) 858 WP_203356784.1 NAD(+)/NADH kinase -
  JNE38_RS12165 (JNE38_12165) argR 2378268..2378717 (+) 450 WP_203356785.1 transcriptional regulator ArgR -
  JNE38_RS12170 (JNE38_12170) recN 2378733..2380457 (+) 1725 WP_203356786.1 DNA repair protein RecN Machinery gene
  JNE38_RS12175 (JNE38_12175) spoIVB 2380575..2381915 (+) 1341 WP_203356787.1 SpoIVB peptidase -
  JNE38_RS12180 (JNE38_12180) spo0A 2382173..2382961 (+) 789 WP_203356788.1 sporulation transcription factor Spo0A -
  JNE38_RS12185 (JNE38_12185) - 2383186..2383752 (+) 567 WP_203356789.1 carbonic anhydrase -
  JNE38_RS12190 (JNE38_12190) - 2383756..2384619 (+) 864 WP_203356790.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64477.49 Da        Isoelectric Point: 4.7438

>NTDB_id=532432 JNE38_RS12170 WP_203356786.1 2378733..2380457(+) (recN) [Brevibacillus choshinensis strain HPD31-SP3]
MLVELSIRNFAIIKSVTVSFQKGLNILTGETGAGKSIIIDALGLLLGGRASADFVRYGEARAEVEGLFELPTGHPALAVC
ESVGVQIEQDGMLVVRRDISNQGKSIIRLNGQLVTLAMLRELGPWLVTVHGQHDTHMLMQADKHINWLDAYGESALGSAK
AEYTNLYTAFRKTKQDLDRMARNERELVQRIDLLQYQLNEIESAALAPGEDEKLQQQRKKWMNIEKVYSSIQDAYRSLYG
DQRGMDWLGHAMGELERVAGYEEQLTPILETVQSAYYQIEDVVHQLRQLSYQMDFEPAQLAEVESRLDQIQSLKRKYGKS
VDDILEYAATISDELDEMHHYEDRLQQVQERLAELAADLAVEALELSVIRQECAQKLAVEIEQQLKELHMERARFAIDVR
QTPDDDGVEIEGIKRHVDANGMDQIEFLISPNPGEPLRPLAKIASGGELSRVMLAIKTILAGTDQVETLIFDEVDTGVSG
RAAQAIAEKLARVAGKRQVLCITHLPQVASMADAHFLIKKEMSEYETMTIVTRLSEDERVIELARMLSGAEVTAKTEEHA
REMILLGRERKTVN

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=532432 JNE38_RS12170 WP_203356786.1 2378733..2380457(+) (recN) [Brevibacillus choshinensis strain HPD31-SP3]
ATGTTAGTAGAACTCTCCATTCGTAATTTTGCCATCATCAAATCGGTTACGGTTTCCTTTCAAAAGGGTTTGAATATCCT
CACCGGTGAAACGGGTGCAGGGAAATCCATCATCATCGATGCACTAGGCCTGCTGCTCGGAGGCAGAGCGTCTGCTGACT
TCGTTCGTTACGGCGAGGCGCGTGCCGAGGTCGAAGGGCTGTTTGAACTGCCAACGGGTCATCCGGCATTGGCGGTGTGC
GAGAGCGTCGGTGTCCAAATCGAGCAGGACGGTATGCTGGTTGTGCGGAGGGATATCTCCAATCAGGGAAAAAGCATCAT
CCGGTTGAACGGACAGCTGGTGACCCTCGCGATGCTGAGGGAGCTGGGGCCTTGGCTGGTGACCGTGCACGGACAGCACG
ATACGCATATGCTGATGCAAGCGGACAAGCACATCAACTGGCTGGATGCCTATGGGGAGTCTGCTCTCGGGAGCGCGAAG
GCCGAGTACACCAATCTGTACACGGCATTCCGCAAAACGAAGCAGGACTTGGATCGAATGGCTCGCAATGAGCGGGAGCT
GGTGCAGCGAATCGATCTTTTGCAATACCAGTTGAATGAGATCGAATCAGCGGCGCTCGCGCCAGGCGAAGACGAAAAGC
TGCAGCAGCAGCGCAAAAAGTGGATGAACATTGAGAAGGTTTATTCATCGATCCAGGATGCGTATCGCTCCTTGTACGGG
GATCAGAGGGGGATGGATTGGCTGGGTCACGCCATGGGTGAGCTGGAGCGCGTGGCGGGGTACGAGGAACAGCTGACACC
GATTCTGGAAACGGTGCAAAGCGCGTATTACCAGATCGAAGACGTCGTTCACCAGCTGCGGCAGCTGTCCTATCAGATGG
ACTTCGAACCGGCCCAGCTGGCGGAGGTCGAGAGCCGTCTGGATCAGATCCAGTCGCTGAAGCGCAAATACGGAAAAAGC
GTAGATGATATACTCGAGTACGCCGCGACCATCTCAGATGAGCTGGATGAAATGCATCACTACGAGGACCGGTTGCAGCA
GGTTCAGGAACGACTCGCGGAGCTTGCGGCCGATTTGGCTGTCGAAGCGCTCGAATTGTCTGTGATCCGTCAGGAATGCG
CACAAAAGCTGGCGGTGGAAATCGAGCAGCAGCTCAAGGAGCTTCATATGGAACGTGCCCGCTTCGCCATTGATGTCAGA
CAAACTCCGGATGACGACGGGGTCGAGATTGAAGGCATCAAACGGCACGTGGACGCGAACGGGATGGATCAGATTGAGTT
TCTCATCTCCCCCAATCCAGGCGAGCCGCTTCGTCCGTTAGCCAAGATCGCTTCTGGCGGTGAGCTCTCTCGGGTCATGC
TCGCGATCAAGACGATCCTCGCGGGAACAGACCAGGTGGAGACGCTCATTTTTGACGAGGTAGACACAGGGGTGAGCGGC
AGAGCCGCACAGGCAATCGCGGAAAAGCTGGCGCGTGTCGCCGGGAAACGCCAAGTGCTGTGCATTACCCATTTGCCACA
GGTAGCTTCGATGGCAGACGCCCATTTCCTCATCAAAAAAGAAATGAGCGAGTACGAGACCATGACCATCGTCACCAGGC
TGTCTGAGGACGAACGTGTCATTGAGCTTGCACGCATGCTGAGCGGCGCAGAAGTCACGGCGAAAACAGAAGAACATGCC
AGAGAAATGATTTTGCTCGGGCGCGAAAGAAAGACTGTCAACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.611

100

0.488