Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JNE38_RS01265 Genome accession   NZ_CP069127
Coordinates   221311..222678 (+) Length   455 a.a.
NCBI ID   WP_203354921.1    Uniprot ID   -
Organism   Brevibacillus choshinensis strain HPD31-SP3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 216311..227678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE38_RS01245 (JNE38_01245) - 216573..217037 (+) 465 WP_203354917.1 CtsR family transcriptional regulator -
  JNE38_RS01250 (JNE38_01250) - 217067..217585 (+) 519 WP_203354918.1 UvrB/UvrC motif-containing protein -
  JNE38_RS01255 (JNE38_01255) - 217603..218682 (+) 1080 WP_203354919.1 protein arginine kinase -
  JNE38_RS01260 (JNE38_01260) - 218752..221202 (+) 2451 WP_203354920.1 ATP-dependent Clp protease ATP-binding subunit -
  JNE38_RS01265 (JNE38_01265) radA 221311..222678 (+) 1368 WP_203354921.1 DNA repair protein RadA Machinery gene
  JNE38_RS01270 (JNE38_01270) disA 222685..223761 (+) 1077 WP_203354922.1 DNA integrity scanning diadenylate cyclase DisA -
  JNE38_RS01275 (JNE38_01275) pssA 223873..224601 (+) 729 WP_203354923.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  JNE38_RS01280 (JNE38_01280) - 224739..225134 (-) 396 WP_203354924.1 DUF1573 domain-containing protein -
  JNE38_RS01285 (JNE38_01285) - 225422..226510 (+) 1089 WP_203354925.1 PIN/TRAM domain-containing protein -
  JNE38_RS01290 (JNE38_01290) ispD 226533..227219 (+) 687 WP_203354926.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49321.77 Da        Isoelectric Point: 6.7403

>NTDB_id=532422 JNE38_RS01265 WP_203354921.1 221311..222678(+) (radA) [Brevibacillus choshinensis strain HPD31-SP3]
MSKYKTKYACQECGYESPKWMGKCPGCGSWNTMVEEMTVKTAHRHEGISGGQKQAAMPLTEVASEEEPRMDTTIGELNRV
LGGGLVPGSLILVGGDPGIGKSTLLLQTSFALAHHGARVLYVSGEESAKQIKLRADRLGTKTPPMFVLAENDLDLIEQHI
NQVDPHVLIIDSIQTVFHPAVQSAAGSVAQVREATAQLMRIAKGKGIGTFIVGHVTKEGSIAGPRMLEHMVDAVLYFEGE
RHNTFRILRAVKNRFGSTNEIGIFEMKDRGLEEVANPSEIFLAERPFGVAGSTVVASMEGTRPVLVELQALVAPTSFVTP
RRMATGVDHQRVAMIMAVLEKRMGMMLQNQDAYVNVAGGVRLDEPAVDLAIAVSIASSFRDHATNPHDVVIGEIGLTGEV
RGVSRIEQRVREAHKLGFKRVIIPEKNIRGLEAPDDIQVIGVSNIGEALNEVIRG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=532422 JNE38_RS01265 WP_203354921.1 221311..222678(+) (radA) [Brevibacillus choshinensis strain HPD31-SP3]
ATGTCAAAGTATAAAACGAAATACGCGTGTCAAGAATGTGGCTATGAATCGCCAAAATGGATGGGGAAATGTCCAGGCTG
CGGCAGCTGGAACACCATGGTCGAGGAAATGACTGTCAAAACAGCTCACCGCCACGAAGGGATCAGTGGTGGACAGAAAC
AGGCTGCCATGCCGTTAACAGAGGTCGCCAGTGAAGAAGAACCGCGCATGGATACGACGATCGGGGAGCTGAACCGCGTT
CTTGGAGGCGGGCTTGTGCCAGGATCGCTCATTTTGGTCGGCGGTGATCCAGGTATCGGGAAATCGACATTGCTCCTGCA
GACCTCGTTTGCGTTGGCTCATCATGGCGCAAGAGTCCTGTATGTTTCCGGGGAGGAGTCCGCAAAGCAGATCAAGCTGC
GTGCAGATCGACTCGGTACCAAAACTCCTCCCATGTTTGTTTTAGCAGAAAATGATCTGGATTTGATCGAACAGCATATT
AATCAGGTAGACCCCCATGTATTGATCATCGACTCGATTCAAACTGTCTTTCACCCTGCCGTTCAATCTGCAGCAGGTAG
CGTCGCTCAAGTGCGTGAGGCGACGGCACAGCTGATGAGAATCGCAAAGGGAAAAGGGATCGGTACGTTTATTGTGGGCC
ATGTGACCAAGGAGGGCTCTATCGCGGGTCCGCGCATGCTGGAGCACATGGTGGATGCCGTCTTGTATTTCGAAGGGGAA
CGCCACAATACGTTCCGGATTTTGCGTGCAGTCAAAAATCGATTCGGCTCGACAAATGAAATCGGGATTTTCGAGATGAA
GGACCGAGGTTTGGAAGAAGTAGCGAATCCCTCTGAAATTTTCTTGGCCGAGCGTCCCTTTGGCGTAGCAGGCTCGACGG
TAGTGGCCAGCATGGAAGGTACTCGTCCCGTCCTGGTTGAGCTTCAGGCACTCGTGGCTCCCACGAGCTTCGTAACCCCG
CGCAGAATGGCAACAGGAGTGGATCACCAGCGTGTCGCGATGATCATGGCTGTCTTGGAAAAGAGAATGGGCATGATGCT
GCAAAATCAGGATGCCTACGTGAATGTAGCAGGTGGCGTCCGCTTGGATGAGCCTGCCGTAGACCTGGCGATCGCAGTCA
GCATCGCGAGCAGCTTCCGCGATCATGCAACGAATCCACACGATGTGGTCATCGGTGAGATTGGCCTTACGGGGGAAGTG
AGAGGCGTATCCCGTATCGAACAACGTGTTCGCGAGGCCCACAAGCTCGGCTTCAAACGCGTGATTATCCCAGAGAAAAA
CATCCGCGGGCTTGAAGCTCCAGATGATATCCAGGTGATCGGAGTATCGAACATCGGGGAGGCTTTGAACGAGGTGATAA
GGGGGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-219)

Subunit ChlI of Mg-chelatase (ChlI)

(337-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.376

100

0.668
  radA Streptococcus mitis NCTC 12261

58.72

99.56

0.585
  radA Streptococcus pneumoniae Rx1

58.72

99.56

0.585
  radA Streptococcus pneumoniae D39

58.72

99.56

0.585
  radA Streptococcus pneumoniae R6

58.72

99.56

0.585
  radA Streptococcus pneumoniae TIGR4

58.72

99.56

0.585
  radA Streptococcus mitis SK321

58.72

99.56

0.585