Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JNE42_RS14990 Genome accession   NZ_CP069098
Coordinates   2881080..2881721 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 63-2-2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2876080..2886721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE42_RS14955 (JNE42_14955) - 2877208..2877639 (+) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -
  JNE42_RS14960 (JNE42_14960) - 2877639..2877980 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  JNE42_RS14965 (JNE42_14965) - 2877973..2879451 (+) 1479 WP_019744043.1 Na+/H+ antiporter subunit D -
  JNE42_RS14970 (JNE42_14970) - 2879458..2879937 (+) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  JNE42_RS14975 (JNE42_14975) - 2879937..2880218 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  JNE42_RS14980 (JNE42_14980) mnhG 2880202..2880576 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  JNE42_RS14985 (JNE42_14985) - 2880667..2881056 (-) 390 WP_017358943.1 hotdog fold thioesterase -
  JNE42_RS14990 (JNE42_14990) comA 2881080..2881721 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  JNE42_RS14995 (JNE42_14995) comP 2881802..2884114 (-) 2313 WP_058336868.1 ATP-binding protein Regulator
  JNE42_RS15000 (JNE42_15000) comX 2884168..2884338 (-) 171 WP_074041927.1 competence pheromone ComX -
  JNE42_RS15005 (JNE42_15005) - 2884335..2885249 (-) 915 WP_168948551.1 polyprenyl synthetase family protein -
  JNE42_RS15010 (JNE42_15010) degQ 2885401..2885541 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  JNE42_RS15015 (JNE42_15015) - 2886047..2886400 (+) 354 WP_017367963.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=532342 JNE42_RS14990 WP_007500477.1 2881080..2881721(-) (comA) [Bacillus altitudinis strain 63-2-2]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=532342 JNE42_RS14990 WP_007500477.1 2881080..2881721(-) (comA) [Bacillus altitudinis strain 63-2-2]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGACGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTCCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718