Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   JNE42_RS11990 Genome accession   NZ_CP069098
Coordinates   2327262..2328032 (-) Length   256 a.a.
NCBI ID   WP_203143474.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 63-2-2     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2322262..2333032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE42_RS11970 (JNE42_11970) - 2322355..2323176 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  JNE42_RS11975 (JNE42_11975) - 2323202..2323840 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  JNE42_RS11980 (JNE42_11980) glyS 2324007..2326052 (-) 2046 WP_203143472.1 glycine--tRNA ligase subunit beta -
  JNE42_RS11985 (JNE42_11985) glyQ 2326045..2326932 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  JNE42_RS11990 (JNE42_11990) recO 2327262..2328032 (-) 771 WP_203143474.1 DNA repair protein RecO Machinery gene
  JNE42_RS11995 (JNE42_11995) - 2328068..2328211 (-) 144 WP_008342408.1 YqzL family protein -
  JNE42_RS12000 (JNE42_12000) era 2328359..2329264 (-) 906 WP_007501305.1 GTPase Era -
  JNE42_RS12005 (JNE42_12005) - 2329257..2329655 (-) 399 WP_008342410.1 cytidine deaminase -
  JNE42_RS12010 (JNE42_12010) - 2329768..2330154 (-) 387 WP_024718818.1 diacylglycerol kinase family protein -
  JNE42_RS12015 (JNE42_12015) ybeY 2330132..2330611 (-) 480 WP_007501310.1 rRNA maturation RNase YbeY -
  JNE42_RS12020 (JNE42_12020) - 2330612..2332726 (-) 2115 WP_375805738.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29295.97 Da        Isoelectric Point: 8.4410

>NTDB_id=532333 JNE42_RS11990 WP_203143474.1 2327262..2328032(-) (recO) [Bacillus altitudinis strain 63-2-2]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAANMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICRQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=532333 JNE42_RS11990 WP_203143474.1 2327262..2328032(-) (recO) [Bacillus altitudinis strain 63-2-2]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCTTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGAACC
ATTCGGGAAGATTTATTTCTGACCGCATATGCCGCAAATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAGGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAAA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.391

100

0.754