Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   JNE42_RS10500 Genome accession   NZ_CP069098
Coordinates   2060645..2061280 (+) Length   211 a.a.
NCBI ID   WP_203144404.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 63-2-2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2055645..2066280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE42_RS10465 (JNE42_10465) - 2056117..2056536 (+) 420 WP_007500867.1 Hsp20/alpha crystallin family protein -
  JNE42_RS10470 (JNE42_10470) - 2056634..2057989 (-) 1356 WP_024719428.1 IS1182 family transposase -
  JNE42_RS10475 (JNE42_10475) - 2058093..2058545 (-) 453 WP_100325379.1 YppG family protein -
  JNE42_RS10480 (JNE42_10480) - 2058654..2059034 (-) 381 WP_225310452.1 YppE family protein -
  JNE42_RS10485 (JNE42_10485) - 2059084..2059320 (-) 237 WP_024718530.1 DUF5446 family protein -
  JNE42_RS10490 (JNE42_10490) sspM 2059514..2059618 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  JNE42_RS10495 (JNE42_10495) - 2059642..2060598 (-) 957 WP_100325378.1 DUF2515 domain-containing protein -
  JNE42_RS10500 (JNE42_10500) recU 2060645..2061280 (+) 636 WP_203144404.1 Holliday junction resolvase RecU Machinery gene
  JNE42_RS10505 (JNE42_10505) - 2061300..2063972 (+) 2673 WP_203143384.1 PBP1A family penicillin-binding protein -
  JNE42_RS10510 (JNE42_10510) - 2064008..2064517 (-) 510 WP_047945926.1 YpoC family protein -
  JNE42_RS10515 (JNE42_10515) nth 2064514..2065176 (-) 663 WP_008344602.1 endonuclease III -
  JNE42_RS10520 (JNE42_10520) - 2065194..2065898 (-) 705 WP_007500879.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24297.53 Da        Isoelectric Point: 9.6582

>NTDB_id=532327 JNE42_RS10500 WP_203144404.1 2060645..2061280(+) (recU) [Bacillus altitudinis strain 63-2-2]
MIRYPNGKSYQPIQQIGTKKRSSGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKHHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=532327 JNE42_RS10500 WP_203144404.1 2060645..2061280(+) (recU) [Bacillus altitudinis strain 63-2-2]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAAGCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCATCATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697