Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JNE42_RS09125 Genome accession   NZ_CP069098
Coordinates   1791200..1791580 (+) Length   126 a.a.
NCBI ID   WP_234925127.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 63-2-2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1786200..1796580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE42_RS09115 (JNE42_09115) - 1787923..1788831 (+) 909 WP_045034804.1 trypsin-like serine peptidase -
  JNE42_RS09120 (JNE42_09120) - 1788978..1790972 (+) 1995 WP_203144352.1 glycosyltransferase family 39 protein -
  JNE42_RS09125 (JNE42_09125) nucA/comI 1791200..1791580 (+) 381 WP_234925127.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  JNE42_RS09130 (JNE42_09130) - 1791724..1792572 (+) 849 WP_017359585.1 STAS domain-containing protein -
  JNE42_RS09135 (JNE42_09135) - 1792605..1793147 (-) 543 WP_007499353.1 IseA DL-endopeptidase inhibitor family protein -
  JNE42_RS09140 (JNE42_09140) - 1793444..1793881 (+) 438 WP_039963541.1 hypothetical protein -
  JNE42_RS09145 (JNE42_09145) lexA 1793929..1794549 (-) 621 WP_007499350.1 transcriptional repressor LexA -
  JNE42_RS09150 (JNE42_09150) yneA 1794709..1795020 (+) 312 WP_007499348.1 cell division suppressor protein YneA -
  JNE42_RS09155 (JNE42_09155) - 1795038..1795685 (+) 648 WP_017359583.1 YneB family resolvase-like protein -
  JNE42_RS09160 (JNE42_09160) - 1795755..1795985 (+) 231 WP_039167715.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13857.52 Da        Isoelectric Point: 8.4954

>NTDB_id=532326 JNE42_RS09125 WP_234925127.1 1791200..1791580(+) (nucA/comI) [Bacillus altitudinis strain 63-2-2]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDRKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=532326 JNE42_RS09125 WP_234925127.1 1791200..1791580(+) (nucA/comI) [Bacillus altitudinis strain 63-2-2]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGAGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGCGGGTATCCTGACAGGAAACGAATTTTATTTATTGTTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.983

94.444

0.548