Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   JNE42_RS05935 Genome accession   NZ_CP069098
Coordinates   1175301..1176266 (+) Length   321 a.a.
NCBI ID   WP_203144240.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 63-2-2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1170301..1181266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE42_RS05905 (JNE42_05905) argF 1170624..1171574 (+) 951 WP_057079702.1 ornithine carbamoyltransferase -
  JNE42_RS05910 (JNE42_05910) - 1171678..1171857 (+) 180 WP_008348517.1 YjzC family protein -
  JNE42_RS05915 (JNE42_05915) - 1172027..1173292 (+) 1266 WP_007499050.1 MFS transporter -
  JNE42_RS05920 (JNE42_05920) - 1173412..1173606 (-) 195 WP_024720055.1 YjzD family protein -
  JNE42_RS05925 (JNE42_05925) - 1173819..1174559 (+) 741 WP_007499048.1 hypothetical protein -
  JNE42_RS05930 (JNE42_05930) - 1174635..1175210 (+) 576 WP_039167361.1 hypothetical protein -
  JNE42_RS05935 (JNE42_05935) med 1175301..1176266 (+) 966 WP_203144240.1 BMP family ABC transporter substrate-binding protein Regulator
  JNE42_RS05940 (JNE42_05940) comZ 1176278..1176475 (+) 198 WP_008348507.1 ComZ family protein Regulator
  JNE42_RS05945 (JNE42_05945) - 1176485..1176718 (-) 234 WP_060832239.1 hypothetical protein -
  JNE42_RS05950 (JNE42_05950) - 1176888..1177826 (+) 939 WP_024720058.1 beta-ketoacyl-ACP synthase III -
  JNE42_RS05955 (JNE42_05955) fabF 1177848..1179089 (+) 1242 WP_203144241.1 beta-ketoacyl-ACP synthase II -
  JNE42_RS05960 (JNE42_05960) - 1179167..1179961 (+) 795 WP_056407963.1 DUF2268 domain-containing protein -
  JNE42_RS05965 (JNE42_05965) - 1180132..1181112 (+) 981 WP_178930030.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 35888.90 Da        Isoelectric Point: 6.1715

>NTDB_id=532310 JNE42_RS05935 WP_203144240.1 1175301..1176266(+) (med) [Bacillus altitudinis strain 63-2-2]
MKYQRLVMIFSFLLLMLSACSQAPLKGHIEKVGLLVPDTINDQVWGTKGYKGLLNIQSTFGVDVYYKEGMVDKEKIVDAI
EEFHKKGVNLIIGHGNEYSEIFNLISEDYPKTQFITVNGGKPQADNVTNVTFKGEAMGFFGGMTAAHMSKTKKIGILATY
DWQSEVDGFIKGAKYQDEHVQVLAEFVENWDDADKAVNLYQKLKKQGVDVVYPAGDGYNIPVIEQIKTDNLSAIGYVTDQ
SNLGSHTVLTSTVQHVDKAYSIIAKKFNEGKLNQQGEYSFDFKEGVIEMGKFSSTIDRAFVKDIEKDIANYKKTGKLPNE
K

Nucleotide


Download         Length: 966 bp        

>NTDB_id=532310 JNE42_RS05935 WP_203144240.1 1175301..1176266(+) (med) [Bacillus altitudinis strain 63-2-2]
ATGAAGTACCAGCGGCTTGTCATGATCTTTTCGTTCCTTCTTCTTATGCTATCTGCCTGCTCGCAGGCGCCGTTAAAAGG
ACATATTGAGAAGGTGGGTTTACTCGTCCCCGATACGATTAATGATCAAGTTTGGGGAACGAAAGGTTATAAAGGCTTAT
TAAATATCCAATCAACATTTGGTGTAGATGTTTATTATAAGGAAGGGATGGTCGACAAGGAGAAAATCGTTGATGCCATT
GAAGAATTTCATAAAAAAGGAGTCAATTTAATTATTGGCCATGGCAATGAATACAGCGAAATTTTCAACTTGATCAGTGA
AGATTATCCGAAAACACAATTTATCACGGTCAATGGAGGCAAGCCTCAAGCTGATAATGTCACAAACGTCACGTTTAAAG
GAGAAGCAATGGGCTTTTTCGGAGGAATGACAGCAGCACATATGTCCAAAACAAAAAAGATTGGTATTCTGGCTACATAT
GATTGGCAAAGTGAAGTAGACGGTTTTATCAAAGGTGCAAAATATCAGGACGAACATGTGCAAGTCCTAGCGGAATTTGT
CGAAAACTGGGATGATGCTGACAAAGCGGTGAACCTCTATCAAAAATTGAAAAAACAAGGTGTAGATGTTGTGTATCCAG
CAGGTGATGGTTATAATATCCCTGTCATTGAACAAATCAAAACCGACAATCTATCTGCGATCGGATATGTCACTGATCAA
TCCAACCTTGGAAGCCATACGGTGTTAACTAGCACTGTACAGCATGTCGATAAAGCGTACAGTATCATTGCGAAGAAGTT
TAATGAAGGCAAGCTAAACCAACAAGGTGAGTACTCCTTTGACTTTAAAGAAGGAGTGATCGAAATGGGGAAATTTAGCT
CAACCATAGACCGCGCTTTTGTGAAAGACATTGAGAAGGATATTGCGAATTACAAAAAAACAGGCAAATTGCCAAATGAA
AAGTGA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(29-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

64.331

97.819

0.629