Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   JNE42_RS05530 Genome accession   NZ_CP069098
Coordinates   1088841..1089419 (+) Length   192 a.a.
NCBI ID   WP_017366958.1    Uniprot ID   A0A5D4P9G2
Organism   Bacillus altitudinis strain 63-2-2     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1083841..1094419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE42_RS05510 (JNE42_05510) - 1084335..1085642 (-) 1308 Protein_1033 globin-coupled sensor protein -
  JNE42_RS05515 (JNE42_05515) - 1085722..1087254 (-) 1533 WP_203144227.1 FAD-dependent oxidoreductase -
  JNE42_RS05520 (JNE42_05520) - 1087396..1088256 (+) 861 WP_203144228.1 SDR family oxidoreductase -
  JNE42_RS05525 (JNE42_05525) - 1088315..1088551 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  JNE42_RS05530 (JNE42_05530) comK 1088841..1089419 (+) 579 WP_017366958.1 competence protein ComK Regulator
  JNE42_RS05535 (JNE42_05535) - 1089563..1090669 (+) 1107 WP_203144229.1 D-TA family PLP-dependent enzyme -
  JNE42_RS05540 (JNE42_05540) - 1091055..1091537 (+) 483 WP_008348662.1 hypothetical protein -
  JNE42_RS05545 (JNE42_05545) - 1091568..1093007 (-) 1440 WP_186365893.1 PLP-dependent aminotransferase family protein -
  JNE42_RS05550 (JNE42_05550) - 1093150..1094319 (+) 1170 WP_203144230.1 MFS transporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22348.40 Da        Isoelectric Point: 8.7996

>NTDB_id=532306 JNE42_RS05530 WP_017366958.1 1088841..1089419(+) (comK) [Bacillus altitudinis strain 63-2-2]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHIFQESSLGDTVVTFTNEQSVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=532306 JNE42_RS05530 WP_017366958.1 1088841..1089419(+) (comK) [Bacillus altitudinis strain 63-2-2]
GTGTCAGGAATTAGTGAAACACCATTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAACGAGTATATTCAAAAGTGATCGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCGCTGCAAATTATAGAACGCA
GTTGCAGGTTCTTTGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGTATATCACACAAGCCTCCC
ATCGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGCCCTCAATGCGGTTGGATCTCCCA
CAAATACATTCATATCTTTCAGGAATCATCCCTCGGAGACACGGTTGTTACTTTTACAAACGAGCAATCGGTCAAACTAG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTACACCGAACAGCGTATCTCCGAACGAAATTTCAAGATCGACTTGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAACCTTGTGTATGATTTTATCTTAAGAGA
ACTTCGTAATCGTTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D4P9G2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.615