Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JNE42_RS02370 Genome accession   NZ_CP069098
Coordinates   433058..433486 (-) Length   142 a.a.
NCBI ID   WP_056702998.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 63-2-2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 428058..438486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE42_RS02340 (JNE42_02340) - 428202..428531 (+) 330 WP_203144085.1 YckD family protein -
  JNE42_RS02345 (JNE42_02345) - 428578..429342 (-) 765 WP_100325514.1 MBL fold metallo-hydrolase -
  JNE42_RS02350 (JNE42_02350) - 429458..429877 (+) 420 WP_198508176.1 Lrp/AsnC family transcriptional regulator -
  JNE42_RS02355 (JNE42_02355) - 429902..430708 (+) 807 WP_113767217.1 aminoglycoside N(3)-acetyltransferase -
  JNE42_RS02360 (JNE42_02360) comJ 430710..431096 (-) 387 WP_039166300.1 competence protein ComJ -
  JNE42_RS02365 (JNE42_02365) - 431234..432931 (-) 1698 WP_056703001.1 methyl-accepting chemotaxis protein -
  JNE42_RS02370 (JNE42_02370) nucA/comI 433058..433486 (-) 429 WP_056702998.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  JNE42_RS02375 (JNE42_02375) - 433855..435924 (+) 2070 WP_061417866.1 hydantoinase/oxoprolinase family protein -
  JNE42_RS02380 (JNE42_02380) - 435914..437899 (+) 1986 WP_203144086.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15961.90 Da        Isoelectric Point: 5.9940

>NTDB_id=532300 JNE42_RS02370 WP_056702998.1 433058..433486(-) (nucA/comI) [Bacillus altitudinis strain 63-2-2]
MKLLKTILLLLLIVIGVATGYVQLEQNKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDKS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=532300 JNE42_RS02370 WP_056702998.1 433058..433486(-) (nucA/comI) [Bacillus altitudinis strain 63-2-2]
ATGAAACTTCTTAAAACCATTCTCTTGCTTTTATTGATTGTCATTGGTGTAGCAACAGGCTATGTCCAACTAGAGCAAAA
TAAACAAGAGACGACAAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGATATCCAGAAACCGCAAAACACA
TAGAAGAAGCTATTGACGAAGGACATTCTTCCATTTGCACCATTGATCGAAAAAATAGTGATGAGCAAAGAGACAAATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGTGGAGCAGGGGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGGGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATTTATTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.345

83.803

0.514