Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   LAE57_RS05380 Genome accession   NZ_CP083434
Coordinates   1121426..1123207 (-) Length   593 a.a.
NCBI ID   WP_224056921.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DC.RB_015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1116426..1128207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAE57_RS05360 (LAE57_05345) - 1116721..1117263 (-) 543 WP_000197262.1 5' nucleotidase, NT5C type -
  LAE57_RS05365 (LAE57_05350) hisC 1117422..1118480 (-) 1059 WP_000663039.1 histidinol-phosphate transaminase -
  LAE57_RS05370 (LAE57_05355) - 1118720..1120234 (-) 1515 WP_000180997.1 ABC transporter permease/substrate-binding protein -
  LAE57_RS05375 (LAE57_05360) - 1120227..1121204 (-) 978 WP_000589262.1 ABC transporter ATP-binding protein -
  LAE57_RS05380 (LAE57_05365) recQ 1121426..1123207 (-) 1782 WP_224056921.1 DNA helicase RecQ Machinery gene
  LAE57_RS05385 (LAE57_05370) - 1123219..1125102 (-) 1884 WP_000525113.1 ABC-F family ATP-binding cassette domain-containing protein -
  LAE57_RS05390 (LAE57_05375) ltaS 1125373..1127313 (-) 1941 WP_000098285.1 polyglycerol-phosphate lipoteichoic acid synthase LtaS -

Sequence

Protein


Download         Length: 593 a.a.        Molecular weight: 68186.17 Da        Isoelectric Point: 6.8095

>NTDB_id=532262 LAE57_RS05380 WP_224056921.1 1121426..1123207(-) (recQ) [Staphylococcus aureus strain DC.RB_015]
MMQQTLSHYFGYEMFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKDQVDQLKAMGIQ
AAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFT
LPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFVLDYIKTHDEDAGIIYCSTRKQVE
ELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRD
GLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDK
SYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEI
LMCDTSIKKLLSNEVEVFTTPFKQKATEKVFINTVEGVDRVLFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPAS
KQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV

Nucleotide


Download         Length: 1782 bp        

>NTDB_id=532262 LAE57_RS05380 WP_224056921.1 1121426..1123207(-) (recQ) [Staphylococcus aureus strain DC.RB_015]
ATGATGCAACAAACATTATCGCATTACTTTGGGTATGAAATGTTTCGACCAGGACAAGAAGAAATTATTAGCAAAGTATT
AGACCATCGTAATGTGCTTGGTGTCTTACCAACTGGTGGAGGTAAGTCTATATGCTATCAAGTACCAGGTTTATTGTTAG
GTGGTACAACAATTGTAATAAGTCCACTTATATCATTAATGAAAGATCAAGTGGATCAGTTAAAAGCGATGGGAATTCAG
GCTGCTTTTTTAAATAGTAGTTTGACTCAAAAAGAGCAACAACGTATTGAAAAAGCATTATCAAATGGAGAAATTCAATT
TTTGTATGTTGCACCAGAACGATTTGAAAACCGATATTTTTTAAACATGCTTCAGCGTATAAAGATTCACTTAGTCGCGT
TTGATGAAGCGCATTGTATATCTAAATGGGGACATGATTTCAGACCGAGTTATCAAAACGTCATTTCTAAAGTATTTACG
TTACCTCAAGATTTTACAATAATAGCGTTGACAGCAACTGCCACGGTTGAAGTACAGCAAGATATTAGAGAAAAGTTAAA
TATCGCTCAAACTGATCAAATTAAAACGAGTACTAAGCGTAGAAACTTAATTTTTAAAGTAAATCCTACTTACCAACGTC
AAAAATTTGTATTAGATTATATTAAAACACACGATGAAGATGCAGGTATTATTTATTGTTCTACACGTAAGCAAGTTGAA
GAGCTTCAAGAAGCCTTAGAAAGCCAGAAAATTGAAAGTGTTATATATCATGCAGGTTTGAGCAATAAAGAAAGGGAAGA
AGCGCAAAATGACTTCTTATTTGATCGTGTTAAAGTAGTCGTTGCTACAAATGCTTTTGGTATGGGTATTGATAAATCCA
ATGTACGTTTTGTTATTCATTATAATATGCCTGGAGATTTAGAATCTTATTATCAAGAAGCGGGTCGTGCAGGTCGTGAT
GGGTTGAAAAGTGAATGTATTTTGTTATTTAGTGAACGCGATATCAATTTACACGAGTATTTTATAACAGTCTCTCAAGC
TGATGATGACTATAAAGATAAAATGGGCGAAAAGTTAACTAAAATGATTCAATATACAAAAACAAAAAAATGTTTAGAAG
CAACAATTGTCCATTATTTTGAACCGAATGAAAAATTAGAAGAATGTGAACAATGTAGTAATTGTGTTCAACAAGATAAA
TCATATAATATGACACAAGAAGCTAAGATGATTATTAGTTGCATCGCTCGTATGAAACAACAAGAGAGTTATAGTGTTAT
CATTCAAGTGCTAAGAGGAGAGTCAACAGATTATATTAAGTATAAAGGTTATGATCAAATTTCAACCCATGGTTTAATGA
AAGGTTACACAACATCAGAATTAAGTCACTTAATAGATGAATTAAGATTCAAAGGGTTCTTAAATGAAAATGATGAAATA
TTAATGTGTGATACTTCAATTAAAAAATTACTCAGTAATGAAGTAGAAGTATTCACAACACCATTTAAGCAAAAAGCGAC
TGAAAAAGTATTTATAAATACGGTTGAAGGGGTTGACCGAGTATTATTCAGTCAGTTGGTAGAAGTTCGTAAAAAGTTAA
GTGACAAATTAACGATAGCACCTGTAAGTATATTTTCTGATTACACGTTGGAGGAATTTGCTAAACGTAAGCCTGCTTCG
AAACAAGATATGATTAATATTGATGGCGTAGGTAGTTACAAATTAAAACATTATTGTCCAGCATTTTTAGAAACGATTCA
AAATTATAAAGCCAAAGTATAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(17-178)

RecQ zinc-binding (RecQ_Zn_bind)

(333-395)

Helicase conserved C-terminal domain (Helicase_C)

(218-320)

RQC domain (RQC)

(400-500)

HRDC domain (HRDC)

(521-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

42.373

99.494

0.422