Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JN168_RS12045 Genome accession   NZ_CP069082
Coordinates   2517886..2519256 (-) Length   456 a.a.
NCBI ID   WP_042737951.1    Uniprot ID   A0A0D0SP69
Organism   Staphylococcus gallinarum strain STP534     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2512886..2524256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN168_RS12030 cysE 2513889..2514530 (-) 642 WP_042738251.1 serine O-acetyltransferase -
  JN168_RS12035 gltX 2514880..2516334 (-) 1455 WP_042737953.1 glutamate--tRNA ligase -
  JN168_RS12040 - 2516760..2517818 (-) 1059 WP_042737952.1 PIN/TRAM domain-containing protein -
  JN168_RS12045 radA 2517886..2519256 (-) 1371 WP_042737951.1 DNA repair protein RadA Machinery gene
  JN168_RS12050 - 2519703..2522165 (-) 2463 WP_042737950.1 ATP-dependent Clp protease ATP-binding subunit -
  JN168_RS12055 - 2522179..2523189 (-) 1011 WP_042737949.1 protein arginine kinase -
  JN168_RS12060 - 2523182..2523733 (-) 552 WP_042737948.1 UvrB/UvrC motif-containing protein -
  JN168_RS12065 - 2523755..2524216 (-) 462 WP_042737947.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50265.83 Da        Isoelectric Point: 7.4593

>NTDB_id=532256 JN168_RS12045 WP_042737951.1 2517886..2519256(-) (radA) [Staphylococcus gallinarum strain STP534]
MAKKKVIFECMACGYQSPKWMGKCPNCGGWNQMEEIVEQKAASPKHGVRSRDNVAKVQKLNDIQHENTPRIISKSAEFNR
VLGGGIVNGSLVLIGGDPGIGKSTLLLQVCAALSQSYNVLYITGEESLNQTKLRAERLDEDSSQLNVFAETDLEVIHETV
KQLKPDLLVVDSIQTIFHPEINSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVKNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLGIIVATASSFKDLAVDGLDCFIGEVGLTGEV
RRVSRIEQRVQEAAKLGFKRVIIPETNIGGWQFPEGIKVIGVKSVHEALKYAINKQ

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=532256 JN168_RS12045 WP_042737951.1 2517886..2519256(-) (radA) [Staphylococcus gallinarum strain STP534]
TTGGCCAAAAAGAAAGTGATTTTTGAATGTATGGCATGTGGGTATCAGTCGCCTAAATGGATGGGGAAATGTCCGAATTG
TGGTGGCTGGAATCAGATGGAGGAAATCGTTGAACAAAAGGCAGCGAGTCCTAAACATGGCGTGCGTAGCCGTGATAATG
TTGCAAAGGTACAAAAATTAAATGATATTCAACACGAGAATACACCTAGAATTATCAGCAAATCAGCTGAATTTAACAGA
GTGCTTGGTGGTGGAATCGTTAATGGTTCTTTAGTGCTCATCGGTGGGGATCCAGGTATTGGGAAGTCAACATTGTTACT
ACAAGTATGTGCGGCTTTATCGCAATCCTATAATGTACTCTATATAACAGGTGAGGAATCACTCAACCAAACTAAATTAA
GAGCTGAAAGATTAGATGAAGATTCAAGCCAGCTCAATGTATTTGCTGAAACAGATTTAGAAGTCATTCACGAAACTGTT
AAACAATTGAAACCGGATTTGCTCGTTGTGGATTCAATTCAAACAATATTCCATCCTGAAATTAATTCGGCACCAGGTTC
GGTATCCCAAGTCAGAGAAAGTACACAAAGTTTGATGAATATCGCAAAGCAGATGAATATCGCGACTTTTATCGTTGGAC
ATGTGACGAAGGAAGGGCAAATTGCTGGACCTCGTTTGCTAGAGCATATGGTGGATACGGTGCTTTATTTCGAAGGTGAT
GAACATCACGCGTACCGCATATTGCGAGCTGTGAAAAATAGATTCGGTTCGACAAATGAGATGGGTATTTTTGAAATGAA
GCAAAGTGGGTTGAAAGGTGTTAAGAATCCTTCAGAAATGTTTTTAGAGGAACGTTCTACCAATGTTCCAGGTTCGACCA
TAGTTTCTACAATGGAAGGCACTAGACCATTATTAATTGAAGTGCAGGCGTTAGTGACGCCTACAACATTTAATAACCCT
AGAAGAATGGCAACAGGGATAGACCATAATAGACTTAGCCTCCTTATGGCAGTGCTAGAAAAAAAGGAGAATTATCTTTT
ACAGCAACAAGATGCATATATTAAAGTTGCAGGCGGTGTTCGATTGACTGAACCTGCCGTCGATTTAGGGATAATCGTTG
CAACAGCGTCGAGCTTTAAAGATTTGGCTGTTGATGGTTTAGATTGCTTTATAGGTGAAGTAGGTTTGACTGGCGAAGTG
AGAAGAGTATCGCGTATAGAACAGCGTGTTCAAGAAGCGGCTAAACTCGGATTTAAAAGAGTTATTATTCCGGAAACGAA
TATTGGCGGTTGGCAATTCCCAGAAGGCATAAAGGTAATAGGTGTTAAAAGTGTACATGAAGCATTGAAGTATGCTATTA
ACAAACAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D0SP69

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

64.912

100

0.649
  radA Streptococcus pneumoniae Rx1

59.556

98.684

0.588
  radA Streptococcus pneumoniae D39

59.556

98.684

0.588
  radA Streptococcus pneumoniae R6

59.556

98.684

0.588
  radA Streptococcus pneumoniae TIGR4

59.556

98.684

0.588
  radA Streptococcus mitis NCTC 12261

59.556

98.684

0.588
  radA Streptococcus mitis SK321

59.556

98.684

0.588