Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   JN168_RS04420 Genome accession   NZ_CP069082
Coordinates   978857..979573 (-) Length   238 a.a.
NCBI ID   WP_107512827.1    Uniprot ID   -
Organism   Staphylococcus gallinarum strain STP534     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 973857..984573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN168_RS04400 - 974937..975161 (+) 225 WP_042739407.1 sulfurtransferase TusA family protein -
  JN168_RS04405 - 975308..976270 (+) 963 WP_229366860.1 LacI family DNA-binding transcriptional regulator -
  JN168_RS04410 - 976338..977819 (+) 1482 WP_229366861.1 sucrose-6-phosphate hydrolase -
  JN168_RS04415 - 977823..978788 (+) 966 WP_042739404.1 carbohydrate kinase -
  JN168_RS04420 agrA 978857..979573 (-) 717 WP_107512827.1 quorum-sensing response regulator AgrA Regulator
  JN168_RS04425 - 979586..980881 (-) 1296 WP_229366862.1 quorum-sensing sensor histidine kinase AgrC -
  JN168_RS04430 - 980907..981044 (-) 138 WP_107512825.1 cyclic lactone autoinducer peptide AgrD -
  JN168_RS04435 - 981044..981616 (-) 573 WP_107512824.1 accessory gene regulator AgrB -
  JN168_RS04440 - 982731..983519 (-) 789 WP_107513041.1 carbon-nitrogen family hydrolase -
  JN168_RS04445 - 983731..984360 (-) 630 WP_042739399.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27972.75 Da        Isoelectric Point: 4.8847

>NTDB_id=532233 JN168_RS04420 WP_107512827.1 978857..979573(-) (agrA) [Staphylococcus gallinarum strain STP534]
MKIFICEDDPRQRENMISIINNYIMIEEKPMEIEVATDDPYEILERSKDLNDIGCYFLDIQLEADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRIIDCLETSESRLKLLSKESNVETIELKRGSNSVYVQYDDVM
FFESSSKSHRLIAHLDNRQIEFYGNLKEIDQLDERFFRCHNSFVVNRHNIESIDSKSRIVYFKNSEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=532233 JN168_RS04420 WP_107512827.1 978857..979573(-) (agrA) [Staphylococcus gallinarum strain STP534]
ATGAAGATATTCATTTGTGAAGATGACCCAAGACAACGCGAGAATATGATTTCAATTATAAACAATTACATTATGATTGA
AGAAAAACCTATGGAAATTGAAGTTGCTACAGATGATCCTTATGAAATTTTAGAACGTTCTAAAGATTTAAATGACATTG
GTTGTTATTTTTTAGATATTCAACTTGAAGCGGATATTAATGGAATAAAGTTAGCAAGTGAGATTCGAAAGCATGACCCA
GTGGGAAATATTATTTTTGTGACAAGTCATAGTGAGTTAACTTATTTAACTTTTGTTTATAAAGTTGCTGCAATGGATTT
TATCTTTAAAGATGATCCTGATGAACTCAAATCAAGAATAATAGACTGTTTAGAAACTTCAGAATCTAGATTAAAATTAT
TATCTAAAGAAAGTAATGTCGAAACAATTGAGTTAAAGCGTGGTAGTAATTCGGTTTATGTGCAATATGATGATGTCATG
TTTTTCGAGTCTTCATCAAAATCACATCGGTTGATAGCACATTTGGATAATCGTCAAATTGAATTTTATGGCAACTTAAA
GGAAATTGATCAATTAGATGAAAGATTTTTCCGTTGTCATAATAGCTTTGTCGTAAATCGACACAACATAGAATCAATAG
ACTCTAAATCTCGTATCGTATATTTTAAAAATAGTGAACATTGTTATGCATCAGTAAGGAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

86.555

100

0.866