Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   JOA01_RS08415 Genome accession   NZ_CP069079
Coordinates   1658312..1659025 (-) Length   237 a.a.
NCBI ID   WP_217374276.1    Uniprot ID   -
Organism   Streptococcus parasuis strain BS26     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1653312..1664025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOA01_RS10060 - 1653768..1653926 (-) 159 WP_254451600.1 hypothetical protein -
  JOA01_RS08395 (JOA01_08400) trxA 1654044..1654358 (-) 315 WP_130554392.1 thioredoxin -
  JOA01_RS08400 (JOA01_08405) - 1654619..1656952 (-) 2334 WP_217374274.1 endonuclease MutS2 -
  JOA01_RS08405 (JOA01_08410) - 1657392..1657940 (-) 549 WP_130554394.1 CvpA family protein -
  JOA01_RS08410 (JOA01_08415) zapA 1657937..1658254 (-) 318 WP_217374275.1 cell division protein ZapA -
  JOA01_RS08415 (JOA01_08420) treR 1658312..1659025 (-) 714 WP_217374276.1 trehalose operon repressor Regulator
  JOA01_RS08420 (JOA01_08425) treP 1659256..1661256 (+) 2001 WP_130554396.1 PTS system trehalose-specific EIIBC component -
  JOA01_RS08425 (JOA01_08430) treC 1661335..1662957 (+) 1623 WP_217374277.1 alpha,alpha-phosphotrehalase -
  JOA01_RS08430 (JOA01_08435) - 1663008..1663301 (+) 294 WP_217374278.1 iron chaperone -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27602.58 Da        Isoelectric Point: 6.7439

>NTDB_id=532185 JOA01_RS08415 WP_217374276.1 1658312..1659025(-) (treR) [Streptococcus parasuis strain BS26]
MKKYQEIYNDLKEKIRTNVYPAETSLPTEQQLQEMYQVSRDTVRKALAILTERGMIQKVQGRGSLVLKHELLNFPISGLT
SYQELTDALQLQSDTTVVDLELITVNSNLSQLTGFEPFSKVWKIVRTRSIDGKVSVVDTDYLSSDIVPKMDKEIAKGSIY
QYLEKELKLDISYAQKEITVEPTSWEERELMKTQDDYLVLIKSRVFLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=532185 JOA01_RS08415 WP_217374276.1 1658312..1659025(-) (treR) [Streptococcus parasuis strain BS26]
ATGAAAAAATATCAAGAAATATATAATGATTTAAAAGAGAAAATACGAACAAATGTCTATCCTGCTGAGACTTCTTTACC
AACTGAACAACAATTGCAAGAAATGTATCAAGTTAGCCGAGATACTGTTCGAAAAGCACTGGCTATTCTGACAGAACGCG
GAATGATTCAAAAAGTTCAAGGAAGAGGTTCTCTAGTTTTAAAACACGAACTATTGAATTTTCCTATTTCTGGCTTAACT
TCGTATCAAGAATTGACGGATGCTTTGCAGTTGCAGTCAGATACAACGGTTGTTGATTTGGAGCTCATTACAGTAAATAG
TAATTTATCTCAATTAACAGGATTTGAACCATTTAGTAAAGTATGGAAAATTGTACGTACAAGGTCCATAGATGGAAAGG
TTTCAGTAGTTGATACGGATTATCTCTCTTCAGATATTGTTCCAAAGATGGATAAAGAAATCGCAAAAGGTTCAATCTAT
CAATATTTAGAAAAAGAACTAAAATTGGATATATCCTATGCTCAAAAAGAAATTACGGTTGAACCAACCAGTTGGGAAGA
ACGTGAATTGATGAAGACTCAAGATGATTACTTGGTGTTGATAAAATCAAGAGTTTTTCTAGGCGATACACAACAATTTC
AATATACTGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTGGATTTTGCTCGTAGAAAGCATTCACTATAG

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

50.855

98.734

0.502