Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   JOA01_RS08155 Genome accession   NZ_CP069079
Coordinates   1604151..1604885 (-) Length   244 a.a.
NCBI ID   WP_217374246.1    Uniprot ID   -
Organism   Streptococcus parasuis strain BS26     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1599151..1609885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOA01_RS08130 (JOA01_08135) - 1600087..1600941 (-) 855 WP_217374243.1 helix-turn-helix domain-containing protein -
  JOA01_RS08135 (JOA01_08140) rpmB 1601244..1601432 (-) 189 WP_001140948.1 50S ribosomal protein L28 -
  JOA01_RS08140 (JOA01_08145) trmB 1601635..1602273 (-) 639 WP_171989646.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  JOA01_RS08145 (JOA01_08150) ccrZ 1602270..1603064 (-) 795 WP_217374244.1 cell cycle regulator CcrZ -
  JOA01_RS08150 (JOA01_08155) - 1603114..1604154 (-) 1041 WP_217374245.1 ABC transporter permease -
  JOA01_RS08155 (JOA01_08160) pptA 1604151..1604885 (-) 735 WP_217374246.1 ABC transporter ATP-binding protein Regulator
  JOA01_RS08160 (JOA01_08165) - 1604948..1605361 (+) 414 WP_217374247.1 HIT family protein -
  JOA01_RS08165 (JOA01_08170) - 1605363..1605665 (+) 303 WP_217374248.1 chemotaxis protein -
  JOA01_RS08170 (JOA01_08175) - 1605807..1606982 (-) 1176 WP_217374249.1 LCP family protein -
  JOA01_RS08175 (JOA01_08180) - 1606979..1607506 (-) 528 WP_217374250.1 GNAT family N-acetyltransferase -
  JOA01_RS08180 (JOA01_08185) tsaE 1607499..1607939 (-) 441 WP_217375192.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  JOA01_RS08185 (JOA01_08190) - 1608045..1609709 (-) 1665 WP_217374251.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27065.41 Da        Isoelectric Point: 4.6053

>NTDB_id=532184 JOA01_RS08155 WP_217374246.1 1604151..1604885(-) (pptA) [Streptococcus parasuis strain BS26]
MLEVKNITGGYINIPVVKDVSFTVESGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGEILIDGKSLVQDAENYRKKIGFIP
ETPSLYEELTLKEHLEVVALAYDLTWDQAWSRVQGLLTVFRLDEKLDWFPVHFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPIAISDLVNLLEEEKAKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQHAFNMKGASLNEIYLALTQE
GVAR

Nucleotide


Download         Length: 735 bp        

>NTDB_id=532184 JOA01_RS08155 WP_217374246.1 1604151..1604885(-) (pptA) [Streptococcus parasuis strain BS26]
ATGTTAGAAGTAAAAAATATAACAGGAGGCTACATCAATATTCCCGTAGTGAAAGATGTATCTTTCACTGTTGAGAGCGG
TCAGTTAGTTGGCTTAATTGGATTGAATGGTGCAGGGAAATCAACGACGATAAAGGAAATTATTGGCCTTTTGACTCCTT
ATCAGGGAGAAATTTTAATTGATGGGAAAAGTCTTGTACAGGATGCAGAGAATTATCGGAAGAAAATTGGATTTATCCCT
GAAACACCTAGCTTGTATGAGGAATTGACGCTTAAGGAACATTTAGAGGTAGTAGCTTTAGCCTATGATTTGACTTGGGA
TCAAGCCTGGAGTCGAGTTCAGGGGTTGTTAACGGTTTTTCGGTTGGATGAAAAATTGGACTGGTTCCCTGTTCATTTTT
CTAAGGGAATGAAACAGAAAGTTATGATAATCTGTGCTTTCATGGTGGAACCGAGTTTGTTGATTGTTGACGAGCCGTTT
TTAGGGCTGGATCCTATAGCGATTTCGGACTTAGTAAACCTATTAGAAGAGGAGAAAGCTAAAGGAACTTCAATTCTGAT
GTCTACTCATGTTCTTGACTCGGCCGAGAAAATGTGTGATTCTTTTGTTATCTTACATCAAGGTCAGGTTCGTGCAACAG
GGAATTTAGAGGAATTGCAACATGCCTTTAACATGAAAGGTGCAAGTCTCAACGAAATTTATCTGGCGTTGACACAAGAA
GGAGTGGCCAGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

70.711

97.951

0.693
  pptA Streptococcus thermophilus LMD-9

69.456

97.951

0.68