Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   JOA01_RS07835 Genome accession   NZ_CP069079
Coordinates   1538641..1540434 (-) Length   597 a.a.
NCBI ID   WP_217374207.1    Uniprot ID   -
Organism   Streptococcus parasuis strain BS26     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1533641..1545434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOA01_RS07815 (JOA01_07820) - 1534544..1535449 (-) 906 WP_217374204.1 ABC transporter permease -
  JOA01_RS07820 (JOA01_07825) opp4B 1535460..1536416 (-) 957 WP_217374205.1 oligopeptide ABC transporter permease -
  JOA01_RS07825 (JOA01_07830) - 1536418..1537359 (-) 942 WP_302480027.1 ATP-binding cassette domain-containing protein -
  JOA01_RS07830 (JOA01_07835) - 1537362..1538381 (-) 1020 WP_217374206.1 ABC transporter ATP-binding protein -
  JOA01_RS07835 (JOA01_07840) oppA 1538641..1540434 (-) 1794 WP_217374207.1 oligopeptide ABC transporter substrate-binding protein Regulator
  JOA01_RS07840 (JOA01_07845) pbp3 1540646..1541887 (+) 1242 WP_217374208.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  JOA01_RS07845 (JOA01_07850) sufB 1542465..1543880 (-) 1416 WP_172036753.1 Fe-S cluster assembly protein SufB -
  JOA01_RS07850 (JOA01_07855) sufU 1544060..1544500 (-) 441 WP_217374209.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 65554.95 Da        Isoelectric Point: 4.1982

>NTDB_id=532182 JOA01_RS07835 WP_217374207.1 1538641..1540434(-) (oppA) [Streptococcus parasuis strain BS26]
MKKTTKLFALAGVTLLSASVLAACGSKSSSSSETAELSFPAEVKQDGTAVAESQLKYALVSASTSSGLLIDELTETTTDS
TFGGMVDISMFGYDGDRKLDDSGLAKAEFDVDGKKITVSLTGKDYKWSDGEPFTIDDYIFTIKAMASKDYTGVRFDDKFL
NIVGMDEFVAGTASDISGLKKVDDYTVELTVKEMSPSMMYAGGDVPAYVQPEHIYKDIPVAEWESSEYSRTAKLVGMGPW
KIKEIVNGESITYVPNEYYFKGTTPKTSSLKIDIVSPDTIVSEMKAGNYDIAQMPADQLDSYKDASNLNLVGSLESSYEY
ISFNLGKYDEASGKNIMDENAKMNDVKLRQAIAYAIDTKTAGEKLYNGLYHPATSLIISFFGDLHDSELEGYSYDPDKAN
ELLDEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVDLYTGRTLEINTFYDAVQANDPSI
DMYAGGWSTGYDPNPNGLWGETAPFNMSRFVDEKNTELLDAIGSVASFDEKTNLKNYKAWQEYAFEQAFAIPTFESEAIT
ALNKRVKNFDTNYGSASENGIALENIELTADKGVAAE

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=532182 JOA01_RS07835 WP_217374207.1 1538641..1540434(-) (oppA) [Streptococcus parasuis strain BS26]
ATGAAAAAGACGACTAAATTATTTGCTCTAGCGGGTGTAACGCTTCTTTCGGCATCTGTACTTGCTGCGTGTGGTTCTAA
ATCTTCTTCTAGCTCTGAGACAGCAGAGTTATCTTTCCCAGCAGAAGTAAAACAAGATGGTACAGCAGTTGCTGAGTCAC
AATTGAAATATGCTTTGGTATCAGCATCAACTTCATCAGGTCTGTTAATTGATGAATTAACAGAGACTACGACTGACTCA
ACCTTTGGTGGAATGGTTGATATTTCAATGTTTGGTTACGATGGGGATCGTAAGTTGGATGATTCAGGTCTCGCGAAAGC
GGAGTTTGATGTTGATGGCAAGAAAATCACTGTTAGCTTGACTGGTAAAGACTATAAGTGGTCTGATGGCGAACCATTTA
CAATTGATGACTATATTTTCACAATTAAAGCAATGGCAAGCAAAGATTACACAGGTGTTCGTTTTGATGATAAATTCTTG
AACATTGTGGGTATGGATGAATTTGTTGCTGGCACAGCTTCAGATATCTCAGGTCTTAAAAAAGTTGACGATTATACTGT
AGAATTGACCGTTAAAGAAATGTCACCTTCAATGATGTATGCTGGTGGCGATGTGCCTGCATATGTTCAACCAGAACATA
TTTACAAAGATATTCCGGTTGCAGAATGGGAAAGCAGTGAGTACTCACGTACTGCAAAATTAGTCGGTATGGGTCCATGG
AAAATCAAAGAAATCGTTAATGGTGAGTCTATCACCTACGTTCCTAATGAATACTACTTCAAAGGAACAACTCCTAAAAC
AAGTTCATTGAAGATTGATATTGTATCACCGGATACGATTGTTTCTGAAATGAAAGCTGGTAACTATGATATAGCCCAAA
TGCCAGCAGACCAGTTGGATTCTTACAAGGATGCCTCTAACCTTAACCTTGTTGGATCTCTAGAATCTTCATATGAATAC
ATCTCATTCAACCTTGGTAAATATGATGAAGCATCTGGAAAGAATATCATGGATGAAAATGCTAAGATGAATGACGTGAA
ACTTCGTCAAGCGATTGCGTATGCGATTGATACGAAAACAGCTGGTGAGAAACTCTATAATGGACTTTATCACCCAGCAA
CTTCATTAATCATCTCGTTCTTTGGTGATCTTCATGATTCTGAATTGGAAGGCTACTCATATGATCCAGATAAGGCTAAT
GAGCTATTAGATGAAGCTGGCTATAAAGATGTTGATGGTGATGGTATTCGTGAAGGCAAAGACGGAAAAGAATTTAAAAT
TACATTTGCTGCTCGTAAACGTACTGAGGCGAACGAAGCACTTGTTCAACAATACATTGCTTGGTGGAAAGAAGTTGGTT
TGAATGTTGACTTGTATACTGGTCGAACTTTAGAAATCAACACATTCTATGATGCAGTCCAAGCTAATGATCCGTCTATC
GACATGTATGCTGGTGGATGGTCAACTGGTTACGATCCAAACCCTAATGGACTTTGGGGAGAAACTGCACCATTTAACAT
GTCACGTTTTGTAGATGAAAAGAATACTGAGTTATTGGATGCGATTGGTTCTGTTGCTTCATTTGATGAGAAAACAAACT
TGAAGAACTACAAAGCATGGCAAGAATATGCTTTTGAACAAGCGTTTGCTATTCCAACATTTGAATCAGAAGCAATTACT
GCACTGAATAAGCGCGTTAAAAACTTTGACACTAACTATGGTTCCGCATCAGAAAATGGTATCGCGTTAGAAAACATTGA
ACTCACAGCTGATAAAGGTGTAGCAGCTGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

86.097

100

0.861