Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JOA01_RS00680 Genome accession   NZ_CP069079
Coordinates   131244..132611 (+) Length   455 a.a.
NCBI ID   WP_217375129.1    Uniprot ID   -
Organism   Streptococcus parasuis strain BS26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 126244..137611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOA01_RS00650 (JOA01_00650) - 126809..127603 (-) 795 WP_130554224.1 formate/nitrite transporter family protein -
  JOA01_RS00655 (JOA01_00655) - 127684..128919 (-) 1236 WP_217374526.1 NAD(P)H-dependent oxidoreductase -
  JOA01_RS00660 (JOA01_00660) - 128934..129536 (-) 603 WP_002939942.1 NADPH-dependent FMN reductase -
  JOA01_RS00665 (JOA01_00665) - 129665..130024 (+) 360 WP_130554221.1 YbaN family protein -
  JOA01_RS00670 (JOA01_00670) - 130255..130698 (+) 444 WP_024388517.1 dUTP diphosphatase -
  JOA01_RS00675 (JOA01_00675) - 130774..131237 (+) 464 Protein_113 histidine phosphatase family protein -
  JOA01_RS00680 (JOA01_00680) radA 131244..132611 (+) 1368 WP_217375129.1 DNA repair protein RadA Machinery gene
  JOA01_RS00685 (JOA01_00685) - 132734..133228 (+) 495 WP_217374527.1 carbonic anhydrase -
  JOA01_RS00690 (JOA01_00690) - 133428..134186 (+) 759 WP_217374528.1 TIGR00266 family protein -
  JOA01_RS10125 - 134357..134482 (+) 126 WP_274505519.1 hypothetical protein -
  JOA01_RS00695 (JOA01_00695) - 134469..134840 (+) 372 WP_254451618.1 hypothetical protein -
  JOA01_RS00700 (JOA01_00700) gltX 135230..136684 (+) 1455 WP_130554215.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49840.33 Da        Isoelectric Point: 6.1911

>NTDB_id=532153 JOA01_RS00680 WP_217375129.1 131244..132611(+) (radA) [Streptococcus parasuis strain BS26]
MIIAKKKTTFVCQNCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTVMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPSMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVATIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=532153 JOA01_RS00680 WP_217375129.1 131244..132611(+) (radA) [Streptococcus parasuis strain BS26]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGCCAAAATTGTGAATACCATTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTTGAAGTCGCCGAAGTCAAGAACGAGCGGGTTAGCCTGACAGGTG
AGAAGACCCGTCCCATGAAACTCAATGAAGTTTCCTCCATTCAAGTGGCTCGCACTAAGACCAACATGGAGGAGTTCAAC
CGAGTCCTCGGTGGCGGTGTGGTGCCAGGGAGTCTGGTCCTGATCGGAGGCGATCCAGGGATTGGCAAATCCACCCTACT
CTTGCAGGTTTCGACCCAGCTTTCGACCATTGGTACCGTCCTCTATGTGTCCGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGGGCGGAACGTTTGGGCGACATCGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAGATTAAGCCAGATTTCCTGATTATCGACTCTATCCAGACCGTTATGAGCCCTGACATCTCCAGCGTGCAAGG
CTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAACTCATGCAGATTGCCAAGACCAACAACATCGCAACCTTTATCGTCG
GTCACATGACCAAGGAAGGAACCCTGGCTGGACCTCGGACCTTGGAGCATATGGTAGACACCGTTCTTTATTTTGAAGGC
GAGCGGCAGCATACCTTTCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCCACCAACGAAATCGGCATTTTTGAAAT
GCAGTCACAGGGTTTGGTCGAAGTCCTCAATCCTAGCGAGGTCTTTCTGGAAGAGCGTTTGGACGGGGCGACAGGCTCTG
CTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCCGAAGTGCAGGCTCTGGTGACCCCGAGCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGACTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTTAAGTCAGCTGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTGGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAAGATAAGCCAACCAACCCACAAGAGTGCTTTATAGGGGAGATTGGCCTGACAGGTGAA
ATCCGCCGTGTCAATCGGATTGAGCAACGGATTAACGAAGCCGCTAAATTGGGCTTTACCAAGGTCTATGCTCCTAAAAA
TTCCCTGACCGGTATCAAGGTGCCCAAGGAAATAACGGTTATCGGCGTGGCAACAATTGGCGAAGTTCTGCAAAAAGTGT
TTAACTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

90.929

99.341

0.903
  radA Streptococcus pneumoniae Rx1

90.708

99.341

0.901
  radA Streptococcus pneumoniae D39

90.708

99.341

0.901
  radA Streptococcus pneumoniae R6

90.708

99.341

0.901
  radA Streptococcus pneumoniae TIGR4

90.708

99.341

0.901
  radA Streptococcus mitis SK321

90.487

99.341

0.899
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624