Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   LAJ61_RS08905 Genome accession   NZ_CP083409
Coordinates   2004446..2005843 (+) Length   465 a.a.
NCBI ID   WP_224053623.1    Uniprot ID   -
Organism   Moraxella osloensis strain FLMOS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1999446..2010843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAJ61_RS08875 (LAJ61_08855) - 2000036..2001004 (+) 969 WP_224053619.1 SIS domain-containing protein -
  LAJ61_RS08880 (LAJ61_08860) - 2001047..2001571 (+) 525 WP_224053620.1 HAD family hydrolase -
  LAJ61_RS08885 (LAJ61_08865) lptC 2001736..2002308 (+) 573 WP_224053621.1 LPS export ABC transporter periplasmic protein LptC -
  LAJ61_RS08890 (LAJ61_08870) lptA 2002492..2003001 (+) 510 WP_224054841.1 lipopolysaccharide transport periplasmic protein LptA -
  LAJ61_RS08895 (LAJ61_08875) lptB 2003059..2003802 (+) 744 WP_224053622.1 LPS export ABC transporter ATP-binding protein -
  LAJ61_RS08900 (LAJ61_08880) - 2003841..2004275 (+) 435 WP_060994791.1 PACE efflux transporter -
  LAJ61_RS08905 (LAJ61_08885) radA/sms 2004446..2005843 (+) 1398 WP_224053623.1 DNA repair protein RadA Machinery gene
  LAJ61_RS08910 (LAJ61_08890) - 2005921..2006253 (-) 333 WP_224053624.1 hypothetical protein -
  LAJ61_RS08915 (LAJ61_08895) - 2006453..2007247 (-) 795 WP_224053625.1 ABC transporter ATP-binding protein -
  LAJ61_RS08920 (LAJ61_08900) - 2007320..2008225 (-) 906 WP_050324121.1 ABC transporter permease -
  LAJ61_RS08925 (LAJ61_08905) - 2008406..2009473 (-) 1068 WP_224053626.1 ABC transporter substrate-binding protein -
  LAJ61_RS08930 (LAJ61_08910) - 2009903..2010412 (+) 510 WP_224053627.1 hypothetical protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 49631.16 Da        Isoelectric Point: 7.2122

>NTDB_id=532117 LAJ61_RS08905 WP_224053623.1 2004446..2005843(+) (radA/sms) [Moraxella osloensis strain FLMOS1]
MAKSKSSYVCQQCGANFGKWSGQCAECGAWNSLVEAPMVSMPHHKPVTKKASNYAGEQSSVMPLNAVPMSLDTRLPTGVG
EFDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTAIHMAENHSLAGSALYITGEESLSQVAMRASRLGLPNNNLKVLAETN
VEIICQALTQEQPVVAIIDSIQTLFTEAIQSAPGGVSQIRESAAILTRYAKQTGTALFLVGHVTKEGALAGPRVLEHMVD
AVLYFEGQSDSRFRMIRAVKNRFGAVNELGIFAMTDAGLKEVANPSAIFLSRYDKPIAGSVVMVSREGTRPLLVEVQALV
DESQGQPRRMALGLDYQRLAMLLAVMHRHGGIQTNGQDVYVNVVGGVKVLETGSDLAVLLACASSIKEKPLPYTLAVFGE
VGLSGEIRPVPNGQERLKEAVKHGFTHAIVPKANAPKTQLEQYQGLKIIAVERLDDAIDSAFNYL

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=532117 LAJ61_RS08905 WP_224053623.1 2004446..2005843(+) (radA/sms) [Moraxella osloensis strain FLMOS1]
ATGGCAAAATCAAAATCATCCTACGTGTGTCAACAATGTGGCGCAAACTTCGGTAAATGGTCGGGACAGTGTGCCGAATG
TGGCGCATGGAATAGCCTTGTCGAAGCGCCGATGGTCAGCATGCCACATCATAAACCTGTCACCAAAAAAGCTAGCAACT
ACGCGGGCGAACAATCGAGCGTCATGCCACTTAATGCTGTGCCTATGTCACTCGATACTAGGCTACCAACGGGTGTTGGT
GAATTTGATCGGGTGTTAGGCGGTGGCTTAGTAGCAGGTTCTGTGGTGCTGATTGGGGGTGATCCTGGTATTGGCAAATC
CACTATTTTGCTACAGACGGCGATTCACATGGCAGAAAATCACAGTCTAGCCGGCAGTGCGCTGTACATTACGGGTGAAG
AATCGTTGTCACAGGTGGCGATGCGGGCTAGTCGTTTGGGGCTACCCAATAACAATTTAAAAGTATTGGCAGAGACCAAT
GTTGAAATAATCTGCCAAGCCCTAACCCAAGAGCAACCAGTCGTCGCTATCATTGACTCCATTCAGACTTTGTTTACCGA
AGCCATCCAATCCGCGCCAGGCGGTGTCAGTCAAATCCGTGAGTCAGCGGCGATTCTGACGCGCTATGCCAAGCAAACGG
GTACAGCGTTATTTTTGGTCGGGCATGTGACCAAAGAAGGGGCGCTGGCAGGCCCTCGCGTGCTAGAACATATGGTAGAT
GCGGTACTGTATTTTGAAGGGCAATCGGACAGCCGTTTTCGAATGATTCGTGCGGTGAAAAATCGTTTTGGTGCCGTCAA
CGAGCTGGGCATTTTTGCCATGACGGATGCAGGGCTCAAAGAAGTGGCGAATCCATCGGCGATATTTTTAAGTCGCTATG
ATAAACCGATTGCAGGCTCAGTGGTCATGGTTAGCCGTGAAGGTACCAGACCACTACTGGTTGAAGTACAAGCGCTGGTG
GATGAATCGCAAGGACAACCTAGGCGCATGGCACTAGGTTTAGATTATCAGCGCTTAGCCATGTTGCTGGCAGTGATGCA
CCGTCATGGCGGTATCCAAACCAATGGGCAAGATGTGTATGTCAATGTGGTAGGCGGGGTCAAGGTGCTTGAAACAGGCT
CAGATTTGGCGGTTTTATTGGCCTGTGCGTCTAGTATCAAGGAAAAGCCTTTGCCTTATACCCTAGCGGTATTTGGTGAA
GTGGGCTTGTCGGGTGAAATCAGACCGGTGCCCAATGGTCAAGAGCGTCTAAAAGAAGCGGTGAAACATGGCTTTACCCA
TGCGATTGTACCCAAAGCCAATGCCCCAAAAACGCAATTAGAGCAATATCAAGGCCTCAAAATTATCGCGGTTGAGCGAC
TAGATGATGCGATTGATAGCGCCTTTAATTATCTATAA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(376-462)

AAA domain (AAA_25)

(86-227)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.3

99.57

0.471
  radA Streptococcus pneumoniae Rx1

45.356

99.57

0.452
  radA Streptococcus pneumoniae D39

45.356

99.57

0.452
  radA Streptococcus pneumoniae R6

45.356

99.57

0.452
  radA Streptococcus pneumoniae TIGR4

45.356

99.57

0.452
  radA Streptococcus mitis NCTC 12261

45.356

99.57

0.452
  radA Streptococcus mitis SK321

45.356

99.57

0.452