Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JNE45_RS11210 Genome accession   NZ_CP069061
Coordinates   2217506..2219239 (-) Length   577 a.a.
NCBI ID   WP_203128605.1    Uniprot ID   -
Organism   Bacillus safensis strain F6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2212506..2224239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE45_RS11195 (JNE45_11195) - 2213382..2214482 (-) 1101 WP_203128604.1 Rap family tetratricopeptide repeat protein -
  JNE45_RS11200 (JNE45_11200) spo0A 2214939..2215742 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  JNE45_RS11205 (JNE45_11205) spoIVB 2216029..2217306 (-) 1278 WP_095408974.1 SpoIVB peptidase -
  JNE45_RS11210 (JNE45_11210) recN 2217506..2219239 (-) 1734 WP_203128605.1 DNA repair protein RecN Machinery gene
  JNE45_RS11215 (JNE45_11215) ahrC 2219273..2219722 (-) 450 WP_024422938.1 transcriptional regulator AhrC/ArgR -
  JNE45_RS11220 (JNE45_11220) - 2219888..2220742 (-) 855 WP_095408976.1 TlyA family RNA methyltransferase -
  JNE45_RS11225 (JNE45_11225) dxs 2220739..2222640 (-) 1902 WP_111292271.1 1-deoxy-D-xylulose-5-phosphate synthase -
  JNE45_RS11230 (JNE45_11230) - 2222791..2223687 (-) 897 WP_420796794.1 polyprenyl synthetase family protein -
  JNE45_RS11235 (JNE45_11235) - 2223671..2223931 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64639.46 Da        Isoelectric Point: 4.8126

>NTDB_id=532051 JNE45_RS11210 WP_203128605.1 2217506..2219239(-) (recN) [Bacillus safensis strain F6]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNSGKSICRINGKLVTISILREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALA
QYQEAYDQYMKTAQKLRQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDERLQEERHQISNYEKIYSSLQNAYNALRNE
QGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSAFDTAFSV
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNTGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDTG
VSGRVAQAIAEKIHKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=532051 JNE45_RS11210 WP_203128605.1 2217506..2219239(-) (recN) [Bacillus safensis strain F6]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACGGTCCT
AACAGGGGAAACAGGTGCCGGAAAATCCATCATGATTGACGCTGTCTCACTTCTCGTGGGAGGAAGAGGTTCTTCTGAAT
TTGTCCGCTACGGTGAAAAAAAGGCAGAGCTGGAAGGGCTTTTTCTTGTACCAGCCGATCATCCTGTATTTGCTCTTTGC
GAAGAGCAAGGAATTGATGCGTCAGATGAAATGATGATCCTCCGCCGTGATATTAACAACAGCGGGAAAAGCATTTGCCG
CATTAATGGAAAGCTTGTCACGATCTCAATTTTACGTGAAGTAGGACGGCTTTTGCTTGATATACATGGTCAGCACGATA
ACCAGCTGCTCATGGAAGATGAAAATCATCTGCATTTGCTCGATCAATTTGGGGCTGAAGAAATTGCACCGGCTCTCGCG
CAGTATCAAGAAGCATATGATCAATATATGAAGACGGCTCAAAAGCTAAGGCAGCTGTCTGAGAACGAGCAGGAAATGGT
GCACCGGTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAGGCGGCGCAATTAGAGCCAGGAGAAGACGAGAGGCTTC
AGGAAGAGCGTCATCAAATCAGCAACTACGAAAAAATCTATTCCTCACTTCAAAACGCGTATAACGCCTTGCGTAATGAA
CAAGGAGGACTTGATTGGGTTGGCATGTCCTCAAGCGAGCTTGAGCAGGTGTCAGAGATCAACGATGATTTGAAGAAGCT
GTCCGAACAAGTGTCGAACTCCTACTACTTATTAGAGGATTCAACCTTCCAAATGCGAAGCATGCTGGATCAATTAGAAT
TCGATCCGGCTCGTCTTGATTTTATTGAATCCAGGCTGAATGAAATGAAGCAGTTAAAACGAAAATACGGCACAACCGTT
GAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATAGATCAAATCCAAAATCGAGACAGCCACCTCCAGACGCT
TAAAAATAAACTGGATGCGATGAGCCGTGATGCCCTGCTCGAAGCACTTAATGTTTCGGAGCTGCGTAAAAAATGGGCCA
AAAAGCTAGCCAAGCAAATTCAAACGGAGCTCAAGGATTTGTATATGGAGAAGTCCGCATTTGACACAGCTTTTTCTGTT
CGATATGCGCCTTTTGGCAGCACCGATTGTCCGCTATTAGACGGAAAACCTGTCCAGCTCGGAAAAAATGGAATCGACCA
AGCACAATTTGTCATTTCTACAAATACAGGCGAACCGATGAAATCTTTATCGAAAGTAGCGTCCGGTGGAGAAATCTCGC
GTGTCATGCTCGCTGTGAAGAGTATTTTCTCAGCCAAACAAGAGGTCACATCCATTATTTTTGATGAGGTTGATACAGGC
GTCAGCGGCAGAGTCGCACAGGCCATTGCCGAAAAAATTCACAAAGTAGCGGCTGGGTCACAAGTGCTCTGCATTACACA
TCTGCCTCAAGTAGCAGCAATGGCCGACACACATCTTTTCATTTCGAAACGCTCGAAAGCGGGCAGAACACTGACAAGTG
TCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCCGGATGATTGCCGGTGTGGAAGTGACAGAGCTGACAAAA
CAGCACGCAAAAGAACTATTGCACCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.91

100

0.759