Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   JNE45_RS10265 Genome accession   NZ_CP069061
Coordinates   2045252..2045887 (+) Length   211 a.a.
NCBI ID   WP_095408853.1    Uniprot ID   -
Organism   Bacillus safensis strain F6     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2040252..2050887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE45_RS10225 (JNE45_10225) - 2040402..2041520 (+) 1119 WP_224928710.1 NADH-dependent flavin oxidoreductase -
  JNE45_RS10230 (JNE45_10230) - 2041579..2042085 (-) 507 WP_095408850.1 PTS sugar transporter subunit IIA -
  JNE45_RS10235 (JNE45_10235) - 2042254..2042673 (+) 420 WP_095408851.1 Hsp20/alpha crystallin family protein -
  JNE45_RS10240 (JNE45_10240) - 2042694..2043152 (-) 459 WP_238409343.1 YppG family protein -
  JNE45_RS10245 (JNE45_10245) - 2043260..2043640 (-) 381 WP_238409344.1 YppE family protein -
  JNE45_RS10250 (JNE45_10250) - 2043690..2043923 (-) 234 WP_238409345.1 DUF5446 family protein -
  JNE45_RS10255 (JNE45_10255) sspM 2044121..2044225 (+) 105 WP_012010346.1 acid-soluble spore protein SspM -
  JNE45_RS10260 (JNE45_10260) - 2044249..2045205 (-) 957 WP_048239359.1 DUF2515 domain-containing protein -
  JNE45_RS10265 (JNE45_10265) recU 2045252..2045887 (+) 636 WP_095408853.1 Holliday junction resolvase RecU Machinery gene
  JNE45_RS10270 (JNE45_10270) - 2045907..2048603 (+) 2697 WP_144470941.1 PBP1A family penicillin-binding protein -
  JNE45_RS10275 (JNE45_10275) - 2048640..2049149 (-) 510 WP_095408855.1 YpoC family protein -
  JNE45_RS10280 (JNE45_10280) nth 2049146..2049808 (-) 663 WP_144484483.1 endonuclease III -
  JNE45_RS10285 (JNE45_10285) - 2049826..2050530 (-) 705 WP_095408857.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24315.63 Da        Isoelectric Point: 9.6581

>NTDB_id=532049 JNE45_RS10265 WP_095408853.1 2045252..2045887(+) (recU) [Bacillus safensis strain F6]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQQ
QNGRKSISKDELMEAGHIMTLGYSPRIDYIKVVETLHFSDESKQQLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=532049 JNE45_RS10265 WP_095408853.1 2045252..2045887(+) (recU) [Bacillus safensis strain F6]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGATTTAAATGAAACGAACCAATACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGTGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCATCCACAACGGACTATAACGGGGTGTACAAAGGTCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACTACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTCGTTATTATATCCGCTTTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTCTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGACGAATTAATGGAAGCAGGTCACATAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCAGCAATTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697