Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JNE45_RS07005 Genome accession   NZ_CP069061
Coordinates   1389081..1389359 (+) Length   92 a.a.
NCBI ID   WP_017359400.1    Uniprot ID   A0A9X0FXL5
Organism   Bacillus safensis strain F6     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1384081..1394359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE45_RS06980 (JNE45_06980) - 1384175..1384450 (-) 276 WP_041084975.1 hypothetical protein -
  JNE45_RS06985 (JNE45_06985) - 1384594..1386213 (+) 1620 WP_142944692.1 ABC-F family ATP-binding cassette domain-containing protein -
  JNE45_RS06990 (JNE45_06990) - 1386251..1387483 (-) 1233 WP_203129758.1 aminopeptidase -
  JNE45_RS06995 (JNE45_06995) - 1387591..1387722 (-) 132 WP_003210922.1 protein YkpC -
  JNE45_RS07000 (JNE45_07000) mreBH 1387797..1388804 (-) 1008 WP_024424745.1 rod-share determining protein MreBH -
  JNE45_RS07005 (JNE45_07005) abrB 1389081..1389359 (+) 279 WP_017359400.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JNE45_RS07010 (JNE45_07010) - 1389493..1390803 (+) 1311 WP_203129759.1 ATP-binding protein -
  JNE45_RS07015 (JNE45_07015) - 1390808..1391644 (+) 837 WP_203129760.1 gamma-glutamylcyclotransferase -
  JNE45_RS07020 (JNE45_07020) - 1391682..1392350 (+) 669 WP_203129761.1 potassium channel family protein -
  JNE45_RS07025 (JNE45_07025) ade 1392613..1394343 (+) 1731 WP_203129762.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=532043 JNE45_RS07005 WP_017359400.1 1389081..1389359(+) (abrB) [Bacillus safensis strain F6]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=532043 JNE45_RS07005 WP_017359400.1 1389081..1389359(+) (abrB) [Bacillus safensis strain F6]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGTGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGAATATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
TTGCTGTTAAAAGAGCTGCAAGAAGCTCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543