Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   JNE45_RS06780 Genome accession   NZ_CP069061
Coordinates   1350601..1351062 (-) Length   153 a.a.
NCBI ID   WP_008356877.1    Uniprot ID   -
Organism   Bacillus safensis strain F6     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1345601..1356062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE45_RS06755 (JNE45_06755) - 1346203..1347087 (+) 885 WP_203129733.1 cation diffusion facilitator family transporter -
  JNE45_RS06760 (JNE45_06760) - 1347152..1347304 (-) 153 WP_203129734.1 hypothetical protein -
  JNE45_RS06765 (JNE45_06765) - 1347606..1348145 (+) 540 WP_203129735.1 RDD family protein -
  JNE45_RS06770 (JNE45_06770) - 1348271..1349581 (+) 1311 WP_203129736.1 MFS transporter -
  JNE45_RS06775 (JNE45_06775) - 1349655..1350563 (+) 909 WP_095408359.1 chemotaxis protein -
  JNE45_RS06780 (JNE45_06780) kre 1350601..1351062 (-) 462 WP_008356877.1 YkyB family protein Regulator
  JNE45_RS06785 (JNE45_06785) - 1351535..1351708 (+) 174 WP_186318630.1 hypothetical protein -
  JNE45_RS19210 - 1352044..1352184 (+) 141 Protein_1292 EamA family transporter -
  JNE45_RS06790 (JNE45_06790) - 1352335..1352550 (-) 216 WP_203129737.1 hypothetical protein -
  JNE45_RS06795 (JNE45_06795) - 1352797..1354074 (-) 1278 WP_048238778.1 MFS transporter -
  JNE45_RS06800 (JNE45_06800) - 1354148..1354645 (-) 498 WP_048238780.1 L,D-transpeptidase family protein -
  JNE45_RS06805 (JNE45_06805) - 1354802..1355659 (-) 858 WP_203129738.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17711.30 Da        Isoelectric Point: 10.2452

>NTDB_id=532041 JNE45_RS06780 WP_008356877.1 1350601..1351062(-) (kre) [Bacillus safensis strain F6]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=532041 JNE45_RS06780 WP_008356877.1 1350601..1351062(-) (kre) [Bacillus safensis strain F6]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAACCCCAAGTTTCTTTATCTTTTGAAAAAACGAGCGCTGCAAAAACTATTACAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAGTATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACTAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTACACAAAGCCCGTCTTCAAACGACTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765