Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   JNE45_RS05170 Genome accession   NZ_CP069061
Coordinates   1042091..1042669 (+) Length   192 a.a.
NCBI ID   WP_024425481.1    Uniprot ID   A0A1L6ZJL9
Organism   Bacillus safensis strain F6     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1037091..1047669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE45_RS19450 - 1037587..1038198 (-) 612 WP_404841197.1 methyl-accepting chemotaxis protein -
  JNE45_RS19455 - 1038343..1038882 (-) 540 Protein_961 protoglobin family protein -
  JNE45_RS05155 (JNE45_05155) - 1038974..1040506 (-) 1533 WP_203129514.1 FAD-dependent oxidoreductase -
  JNE45_RS05160 (JNE45_05160) - 1040648..1041508 (+) 861 WP_024425480.1 SDR family oxidoreductase -
  JNE45_RS05165 (JNE45_05165) - 1041565..1041801 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  JNE45_RS05170 (JNE45_05170) comK 1042091..1042669 (+) 579 WP_024425481.1 competence protein ComK Regulator
  JNE45_RS05175 (JNE45_05175) - 1042987..1043469 (+) 483 WP_203129516.1 hypothetical protein -
  JNE45_RS05180 (JNE45_05180) - 1043501..1044940 (-) 1440 WP_203129517.1 PLP-dependent aminotransferase family protein -
  JNE45_RS05185 (JNE45_05185) - 1045086..1046255 (+) 1170 WP_203129519.1 MFS transporter -
  JNE45_RS05190 (JNE45_05190) - 1046321..1046599 (+) 279 WP_203129958.1 barstar family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22350.37 Da        Isoelectric Point: 8.7996

>NTDB_id=532031 JNE45_RS05170 WP_024425481.1 1042091..1042669(+) (comK) [Bacillus safensis strain F6]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVTFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=532031 JNE45_RS05170 WP_024425481.1 1042091..1042669(+) (comK) [Bacillus safensis strain F6]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCAGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAACCCCTGCAAATTATTGAACGCA
GCTGCAGATTCTTCGGCTCAAGCTATGCAGGCAGAAAGGCGGGAACATACGAAGTAACAGGAATATCCCATAAGCCTCCA
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACTTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAAGAATCATCCCTCGGAGACACGGTGGTTACCTTTACAAATGAGCAAACCGTCAAACTTG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACCGAACAGCATATCTCCGAACGAAATTTCAAGATCGTCTGGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAATCTCGTATACGATTTTATATTAAGAGA
GCTTCGCAATAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L6ZJL9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.979

100

0.62